RNA id: TU16888


Basic Information

Item Value
RNA id TU16888
length 709
lncRNA type sense_over
GC content 0.46
exon number 2
gene id oaf
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22473652 ~ 22517780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttaatcacagtttttttttcatgcatcttggcatcatgttctcttcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcagaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagcggttttcaatttggtaaaatcaaagaaactcatcatttttaagtgctctcttatttttttccggagctgtaaGTTCCAATACTACAGTTTTCCAGTTGAAACTGATTGTCTGCAGTATCACTTTGTACACAACACTGACATCTGCTGGTTATATTTCTAGTATACAGTGAGACAGTGCCAAGTCTCAGCCTTTGATGAGTTAAACTCATCAAACCAATGCAAGAAATGTGATTTTTACTTACTGAGCCTTAAATACTGTCCCAGATAACATGTCCATGTGGAGCCTATATGGGTAGATCAATTGGGAACCAGAAGTATTGTCCACAGATTGCATCTGTGCACAGATCATTGTACATGGACCTtgaagtaggggtgtgccatagcGTATCGTACATGATCATATCGCCAAAAAATTttaatatcgtgaatgatattataccctaaaatattgtgccatatcacccacccctaattacctaattattacatcagggttctacttttttactgtttttatcaaaataaaaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16875 lncRNA upstream 152555 22300996 ~ 22341513 (+) False spa17
TU16872 lncRNA upstream 152555 22329719 ~ 22341513 (+) False spa17
TU16841 lncRNA upstream 266918 22164761 ~ 22227150 (+) False G12523
TU16840 lncRNA upstream 296242 22164761 ~ 22197826 (+) True G12523
TU16828 lncRNA upstream 360426 22130603 ~ 22133642 (+) True G12514
TU16939 lncRNA downstream 54784 22572564 ~ 22615440 (+) True G12585
TU16946 lncRNA downstream 97802 22615582 ~ 22618917 (+) True G12588
TU16950 lncRNA downstream 119836 22637616 ~ 22637893 (+) True G12592
TU16951 lncRNA downstream 126944 22644724 ~ 22645561 (+) True G12593
TU16953 lncRNA downstream 133050 22650830 ~ 22651377 (+) True G12595
XM_022675143.1 mRNA upstream 58634 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA upstream 58634 22406379 ~ 22435434 (+) False LOC103038252
XM_022675150.1 mRNA upstream 58634 22406380 ~ 22435434 (+) False LOC103038252
XM_022675133.1 mRNA upstream 103067 22352369 ~ 22391001 (+) True LOC103037938
XM_022677927.1 mRNA upstream 152560 22319293 ~ 22341508 (+) True spa17
XM_022675164.1 mRNA downstream 3462 22521242 ~ 22529283 (+) True LOC103034910
XM_022675166.1 mRNA downstream 8402 22526182 ~ 22529283 (+) False LOC103034910
XM_022675174.1 mRNA downstream 15899 22533679 ~ 22614509 (+) True LOC103038567
XM_022675171.1 mRNA downstream 15899 22533679 ~ 22614509 (+) False LOC103038567
XM_022675183.1 mRNA downstream 15899 22533679 ~ 22614509 (+) False LOC103038567
TU16874 other upstream 109096 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 152555 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 1030419 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1517791 20976204 ~ 20976277 (+) True trnan-guu
TU16383 other upstream 1521974 20966288 ~ 20972094 (+) False LOC103033739
TU17542 other downstream 1336218 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2196571 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 2198110 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 2338153 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 2534733 25052513 ~ 25056103 (+) True G13445

Expression Profile