RNA id: XM_022675150.1


Basic Information

Item Value
RNA id XM_022675150.1
length 2378
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC103038252
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22406379 ~ 22435434 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTGTGCATCAGACTGCACTAAAATATAATTTCAatatcaatttaaataaattaaacgtAACGGCAACCAACGAGACAGACCACGTTATCGCCCTTAGTAACAGTCCCCTGGCAACCGGCGCTCAGTGACAATTGCATtcaaagtccttcaaaatctcCAGGTCTCCCCCCTCACTCACTCTATTACACTACACACGCTCAGCTGTGGATAAACTGCACATGACACGAGAGAACGGCACAGATCCAACAGCTCAGTGATTCCCTCTGTGGTTTCTTGGATCAGATCTTGAGGAAAGCGTCTTCCTCCACAGTTGGACAGCATGGGCTCAGGTTCCTCATCATACTCCCCCAAAACCATATACCTGGACGTGGACGGCAAAGTGCAGAAGGTGTTGTTCAGTCGACACTGCAGCCCATGTGACATTAAAGAACTGCTGTGTACTTCTTCCAATATCCCCAGGAACACAGCTGTCATGCTGGTGGACCCTGAGGGAGCTCTAGTGTCCATTGATCCCACGATGCCCACCAACTCTCCCAGTTCTCTATACAAAGTGGTTCCTCTGTCCTTTGGCCTGCTCGGAGAGAAAGAAGACATGTTTCAGAACGTGTTATCGCAGGTGGCAGAGCAGTTCAGCAGgGCCTTCAGGATCAATGAGCTGAAGACTGAAGTGACCAACAGGCTGGCGATGCTGGAGAAGAGAGTGGAGTTGGAGGGCCTGAAGGTTGTGGAGATCGAGAAGTGCAAGAACGACCTGAAGAAGCTGAGGGATGAGATGACCtccagaggaggaggaagAGTGAACTGCCCGTGTAAATACAACTTCTCAGACGACGGGAAGAAACTCACCCCCAGGCGAGATGTTCCCAGCTACCCAAAGTACACACTCTCCCAGGAGACCATCGAGGCTCTGAAGAAACCCACGTTTGATGTGTGGCACTGGGAGCACAATGAGATGCTCAGCTGCTTGGAGTACATGTACCATGACCTGGGCCTGGTAAAGGAGTTCAACATGAACCCCATTACTCTCAAACGATGGCTGCTCGCTATTCAGGAGAATTACCGCAGCAACCCCTTCCACAATTTCCGCCATTGCTTCTGCGTGAGTCAGATGATGTATGGCATGATTCACCTCTGTAACCTGCAGGAAAAGCTCACTCTGACAGACTTGGGCATTTTAATGACTGCAGCAGTATGCCACGACTTGGACCACCCTGGATACAATAACACGTACCAGATAAATGCCCGCACTGAGCTCGCCGTGCGCTACAATGATATCTCTCCTCTGGAGAATCACCACTGTGCTGTCGCCTTCCAAATCCTGGCTCTGCCCGAGTGCAACATCTTCGCCAATGTGGATTCTGAAACCTTTAAACAGATCCGCCAGGCGATCATCACACTGATTTTGGCCACAGACATGGCCCGACATGGAGAGATCCTGGACTCCTTCAAGCACAAAGTGGACAATTTTGATTTCACCAATGAGGAGCATGTGACTTGCCTGAAGATGGTCCTGATCAAGTGCTGTGACATTTCCAACGAGGTCAGGCCCACAGAAGTGGCGGAGCCATGGGTGGACTGTCTGCTGGAGGAGTACTTCATGCAGAGTGACCGTGAGAAGTCAGAGGGTTTACCTGTCGCTCCCTTTATGGACAGAGACAAAGTGACCAAACCCACGGCTCAGATTGGCTTCATTAAGTTCGTCCTTATTCCCATGTTTGAAACAGTCATGAAGcTCTTCCCACAGATTGAGGAAATCATGGTGCAACCTCTGCGGGATTCACGGGATCACTATGAGGAGCTGAAGCAGATTGATGATGCCATGACTGAGGGATCTTCCTTTCTGACCCGTTTCTGCAGCAGTAGCAGAGCTCCGGTCTGAGGCTTTGCTGAGGAGGTCCAGTTtgaagatgatgaagatgatgaagatggcTGCTCCATCTGCTGAATCCAAAGAGGAAGGAGTCTGAGATGAGATGCTCGGGCTTTTGGAACAAAGACAACAAAGGTTCTTCCAGAATAGCTGCAAGATTACAGACAGCTAGACAATAGATTGGACTGATCATCACTGTTGTTTTTTCATGTGGCCTCCTGGGGCATTGTGGgaatatacaaatatatcagtatgtttttattttattcttctttttcttttatcgTTTGTGCTGTGTTCTTCCTCCAGCACTTTGTGTGCGGTGCATGGGGAGTAAGTCTCTTAAGTCTCTTATACTTTATAGAGAGTTTTTACATTAACAGAGTTTCTAATTAAACATCATGAAGTCAGTGCAGATCAATAGTTAACTCTtcacactttacattaagtgttgactaactaacattaaattaatgaattaatgcattagttaccatgaataaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16875 lncRNA upstream 64867 22300996 ~ 22341513 (+) False spa17
TU16872 lncRNA upstream 64867 22329719 ~ 22341513 (+) False spa17
TU16841 lncRNA upstream 179230 22164761 ~ 22227150 (+) False G12523
TU16840 lncRNA upstream 208554 22164761 ~ 22197826 (+) True G12523
TU16828 lncRNA upstream 272738 22130603 ~ 22133642 (+) True G12514
TU16893 lncRNA downstream 40770 22476204 ~ 22519541 (+) True G12562
TU16888 lncRNA downstream 58634 22494068 ~ 22517780 (+) False oaf
TU16927 lncRNA downstream 76096 22511530 ~ 22512347 (+) True G12581
TU16939 lncRNA downstream 137130 22572564 ~ 22615440 (+) True G12585
TU16946 lncRNA downstream 180148 22615582 ~ 22618917 (+) True G12588
XM_022675133.1 mRNA upstream 15379 22352369 ~ 22391001 (+) True LOC103037938
XM_022677927.1 mRNA upstream 64872 22319293 ~ 22341508 (+) True spa17
XM_022677708.1 mRNA upstream 87928 22309352 ~ 22318452 (+) True LOC111194234
XM_022675098.1 mRNA upstream 450536 21938389 ~ 21955844 (+) True ankk1
XM_022677910.1 mRNA upstream 475076 21919218 ~ 21931304 (+) True LOC111194280
XM_007229389.3 mRNA downstream 38594 22474028 ~ 22515097 (+) True oaf
XM_022675164.1 mRNA downstream 85808 22521242 ~ 22529283 (+) True LOC103034910
XM_022675166.1 mRNA downstream 90748 22526182 ~ 22529283 (+) False LOC103034910
XM_022675174.1 mRNA downstream 98245 22533679 ~ 22614509 (+) True LOC103038567
XM_022675171.1 mRNA downstream 98245 22533679 ~ 22614509 (+) False LOC103038567
TU16874 other upstream 21408 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 64867 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 942731 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1430103 20976204 ~ 20976277 (+) True trnan-guu
TU16383 other upstream 1434286 20966288 ~ 20972094 (+) False LOC103033739
TU16886 other downstream 38218 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1418564 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2278917 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 2280456 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 2420499 24855933 ~ 24857022 (+) True G13237

Expression Profile