RNA id: TU20397



Basic Information


Item Value
RNA id TU20397
length 210
lncRNA type read_through
GC content 0.31
exon number 2
gene id G15166
representative True

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32903356 ~ 32970944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGATCATCCCAGCCTTCCCTGCCCTCACTGACCCACGGGTTGCCAAATCTGGAgctgttttctgaatgtttaacACACACAGTAGAGACAAGATTTGAAAAATTAggaaaacacttcagtttctgaatcagtttctctgattttgctttttataggtttatgtttgagtaaaataaacattgttgttttattctataaactacagacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20367 lncRNA upstream 61853 32822574 ~ 32841503 (+) True G15141
TU20352 lncRNA upstream 68152 32764220 ~ 32835204 (+) True G15130
TU20345 lncRNA upstream 137150 32747931 ~ 32766206 (+) True G15125
TU20332 lncRNA upstream 167158 32733830 ~ 32736198 (+) True G15119
TU20333 lncRNA upstream 169730 32732245 ~ 32733626 (+) True G15120
TU20401 lncRNA downstream 200 32971144 ~ 32983383 (+) True G15169
TU20402 lncRNA downstream 11546 32982490 ~ 32983383 (+) False G15169
TU20406 lncRNA downstream 62235 33033179 ~ 33066558 (+) True G15170
TU20445 lncRNA downstream 104497 33075441 ~ 33096870 (+) True G15194
TU20451 lncRNA downstream 110112 33081056 ~ 33084299 (+) True G15197
XM_022676964.1 mRNA upstream 94022 32801334 ~ 32809334 (+) True thegl
XM_007260331.3 mRNA upstream 104469 32795318 ~ 32798887 (+) False arl9
XM_022676587.1 mRNA downstream 3453 32974397 ~ 32982157 (+) True LOC103027883
XM_022676579.1 mRNA downstream 18180 32989124 ~ 32992710 (+) True LOC103034989
XM_022676563.1 mRNA downstream 25618 32996562 ~ 33032010 (+) True LOC103027667
XM_022676603.1 mRNA downstream 115854 33086798 ~ 33092311 (+) True fgf2
XM_022676611.1 mRNA downstream 131349 33102293 ~ 33167611 (+) True spata5
TU20126 other upstream 724758 32174401 ~ 32178598 (+) True G14985
TU20118 other upstream 858298 32041062 ~ 32045058 (+) False smim13
TU20119 other upstream 858298 32041062 ~ 32045058 (+) False smim13
XR_002650771.1 other upstream 2131242 30747676 ~ 30772114 (+) False LOC103032125
TU19643 other upstream 2634974 30260677 ~ 30268382 (+) False G14638
TU20413 other downstream 52292 33023236 ~ 33036983 (+) False G15170
TU20795 other downstream 1248999 34219943 ~ 34221268 (+) False G15411

Expression Profile