RNA id: TU4436


Basic Information

Item Value
RNA id TU4436
length 1210
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G3377
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13463095 ~ 13464950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCCAAAAGTGATTTGTCCCCATATTGCGAGTACTGTATTAAGCACTGCTCGTTTATTTTCGGTACCATGGCCTGTTTTCACTTATGCACAGACTGAAAAACTAAGAATACTCCTATTAAAGAGTATACATTGACTGAGAAATATGAATATTGAGctaaaatccacatctctatcagatttcttaatcagatttttatacCTTTCTCCGGTCTATGAAATCATAGTACTGGTATGTTGTTTTGAGTGGATGATTGACTgcatgtaaattaaattactgaaCTGATTTGAGACTTCTCTGATTTTATGGCGTTGAGTGGCTGAAGCTGTACATATAAACTACGAATAGGGTTAGGGCTCTCGCTCTATAAACGCAACATGTCTCTCTTTTCTGCACATCCTATTCAAACATGCAGCAACACTACAACTGTAAAGAAGTTTGAAACTGGAACAACAAATATAAATGGAACATCCCTTTACACAGAAAGGTCAAGTCGTCAACTTTGATTTAAAACAGCTTTTCATGTTttatacacaaaacacacagattccCAATGGCCTTGAACCTCATGAACCAATGAGCAATGAAGACAGATCATTTTATAGTACAACAGACCCCACCCAATCCCAAACGTCTCTAGAACATGAACCAGCATAGGCAACTTCTCGATTGCCACTGATGTGATCTTTTCTCCAGCTGGTCTCAGAACAgtttgcatttatatttatgaataAGATGCAGGTACAGAAAGCTGGTCCTGGACCAGTGCTCAAGCAGCACAGgacttctcttctctctcttctctctctttttctctctctctctctcattcactctcacTCCGTTACTTGTCCTGGCCTCTCTCATCCGTGTGGTGTCTGTCTCGCCGAGCCCTGCACTCTGCACATTCGCCACCTTCATCCCCACCCTCCTCATCCTCGTCCTCATCCCGGATGATCTCCACTTCAAGGCGGCCGATGTAGAGGGATACCGCACACAGCCAGAAGAGGGCGACGCTGGACACCACAGCAGTGTGGAGCAGTGCAGCCGGCAGAGAGATCAGCATGATTCTTCTTAGGGTCAGCAAGCTGCCCACGTAAGACGCCCCACCAAacgacacacacactcctccaagGACGAAAAAAACCATATCCTGCTTCTCTTCCCACGTCACTCTGTACAAAGGCAATGACTCCAATCCCAGTAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4377 lncRNA upstream 257549 13153020 ~ 13205546 (+) False G3342
TU4378 lncRNA upstream 300508 13075597 ~ 13162587 (+) True G3342
TU4352 lncRNA upstream 463649 12999045 ~ 12999446 (+) True G3323
XR_002652336.1 lncRNA upstream 470972 12989585 ~ 12992123 (+) True LOC111197033
XR_002652330.1 lncRNA upstream 470972 12990819 ~ 12992123 (+) False LOC111197033
XR_002648489.1 lncRNA downstream 2723 13467673 ~ 13492977 (+) True LOC111188402
TU4446 lncRNA downstream 17099 13482049 ~ 13485913 (+) True G3381
TU4455 lncRNA downstream 62257 13527207 ~ 13528094 (+) False G3388
TU4457 lncRNA downstream 62257 13527207 ~ 13541209 (+) True G3388
TU4459 lncRNA downstream 79500 13544450 ~ 13549314 (+) True G3390
XM_007260896.3 mRNA upstream 7622 13383977 ~ 13455473 (+) True npas1
XM_022687076.1 mRNA upstream 7622 13383977 ~ 13455473 (+) False npas1
XM_007260897.3 mRNA upstream 132798 13186121 ~ 13330297 (+) True arhgap35
XM_022686943.1 mRNA upstream 132798 13186121 ~ 13330297 (+) False arhgap35
XM_007260900.3 mRNA upstream 312911 13124782 ~ 13150184 (+) True LOC103022831
XM_007260888.3 mRNA downstream 198496 13663446 ~ 13678351 (+) True prpf8
XM_007260881.3 mRNA downstream 213719 13678669 ~ 13691891 (+) True LOC103044209
XM_007260882.3 mRNA downstream 213722 13678672 ~ 13691891 (+) False LOC103044209
XM_007260879.3 mRNA downstream 227216 13692166 ~ 13704422 (+) True scarf1
XM_007260878.2 mRNA downstream 250222 13715172 ~ 13721065 (+) True LOC103043284
TU4335 other upstream 478826 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 1535845 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 2174249 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 2183936 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 3720630 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 1496223 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 1573605 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 1581363 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 1607890 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 3077992 16542942 ~ 16545854 (+) True G4221

Expression Profile