RNA id: XR_002649787.1


Basic Information

Item Value
RNA id XR_002649787.1
length 1162
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC111192011
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15639346 ~ 15655321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGTtttgcccgtgcagcactggtgacgtcacgaggttggttggttgaagaacCCAGGTACATAGCTAGCTGTCAAGGTTAAGGAAAAGAGCTTGTTGCTGTCAAGATTATGGATAAGGACGAAGTTTAAGGGGTTCCTAGAAACCCAATGGCTTATGCGTTCGAGCCGGTGAGGAGACGAGACAGATTAACGCTACAAACTCCGATTTGTACAGAGGAGCAGCCAGCGGTTCCCGTACAAGTGGAGGACAACACTAAGTTACCTGGTGCAGATGCGGTCACTGCACTGCCGTGCCGACTGCAACCGAGTGGATTTGCTGTCAGGAGGCAAACGTGGACCATTTGCTCAGGGATCTTCCCTGCAGAAACCTGAGCAGAACCTTTCATATGCTTTTCTAAGAGCGAGACGTTTTGGGGGTGTCCCTGCTCTTTCTAGGTGTGATCCGTGCAGAAACCCTGCAACAGCCCGTCAACAGCAGaAAACCACAGATCAGTATGGACACTGGACTTTTTAACAgaacacaaacagagagagatcaAGAAGAAAGAGCTTTCTTTACCTTCATCCACACAAAAGCACATTTGCTATGAGCTATATAGCTAATCTCACTGCGTAAGCCCCTCATCAAGCTCATTTGAGCCCCTGCAGTACCTAAAACAGCAATCAGAGGCAGGTAAACACTACACTTTAGCCACACTAATGAAGAAAACAATTCTCTCAAATGAGGCTAGAATTagattacatacagtatgctgTGCGAGAGAGTGTTTTTTCCTCTGAAATTAGCTAAGCACTGCTACAATTAAACAAGTAGCACACCTGGTGATAAATAGCCCCCAAAGACATTAGAAGAGGTGAAAGGAGGGGAGGAACAGGGGGGCATCTTCAGCTCGTGAGAAGTCCCTGAATTGTGCTGGTTGAGTTGCAGCTGTGAGCGGCTTTACAGCGATGCTGCTCATTCCTCCCGCCTCATTTATCATAGTCAGCGCTGAGGAGGAGGCTGGAGGCCATGCTGGGTCTATTGTATTAGCAAACACACTCGTCAGAGCACAGCTCATTGTCTGCTTTTTACACCCTCTTCCCCTCCGCAGTGTCCTTGCGCTCCAGTAATGAGCGGCTAGTTGAGGTAGAGGTGTTAAAAGGCAGCCTATTCCATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5122 lncRNA upstream 20175 15617118 ~ 15619171 (+) True G3808
TU5181 lncRNA upstream 102103 15536490 ~ 15537243 (+) True G3855
TU5164 lncRNA upstream 263703 15374631 ~ 15375643 (+) True G3840
TU5140 lncRNA upstream 348957 15288594 ~ 15290389 (+) True G3825
TU5131 lncRNA upstream 383447 15255457 ~ 15255899 (+) True G3816
XR_002650144.1 lncRNA downstream 4889 15660210 ~ 15664348 (+) True LOC111192856
TU5273 lncRNA downstream 107923 15763244 ~ 15772504 (+) True G3894
TU5242 lncRNA downstream 139462 15794783 ~ 15797303 (+) False LOC103040601
TU5246 lncRNA downstream 139462 15794783 ~ 15826103 (+) False LOC103040601
TU5297 lncRNA downstream 230793 15886114 ~ 15888367 (+) True G3917
XM_022667703.1 mRNA upstream 21559 15211657 ~ 15617787 (+) True LOC103023867
XM_022667753.1 mRNA upstream 21559 15211657 ~ 15617787 (+) False LOC103023867
XM_022667792.1 mRNA upstream 21559 15211657 ~ 15617787 (+) False LOC103023867
XM_022667660.1 mRNA upstream 21559 15211657 ~ 15617787 (+) False LOC103023867
XM_022667826.1 mRNA upstream 21559 15211657 ~ 15617787 (+) False LOC103023867
XM_007236888.3 mRNA downstream 54159 15709480 ~ 15729311 (+) True LOC103029544
XM_022668895.1 mRNA downstream 76158 15731479 ~ 15774952 (+) False LOC111192347
XM_022671384.1 mRNA downstream 77966 15733287 ~ 15762061 (+) True LOC103028185
XM_022668890.1 mRNA downstream 114956 15770277 ~ 15774952 (+) True LOC111192347
XM_022668835.1 mRNA downstream 126317 15781638 ~ 15797309 (+) True LOC103040601
XR_002649582.1 other upstream 477072 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 592962 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 600432 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 675763 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2655077 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 887621 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 963725 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 963725 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2416643 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2745733 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile