RNA id: XM_022667660.1


Basic Information

Item Value
RNA id XM_022667660.1
length 1627
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC103023867
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15211657 ~ 15617787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAGAGCTGAGCTGATCCCACGTGTGACGCTGCTTTCCCCGGCTCGCCACTGTTCTGTTAGCGGGGTCTTCGGCTACAGCGGGTCGGTCGCTCTGCAAGCCAGcgagccagcagcagcagcaacagcagcagcaagcaGCAGCCAGCCAGCGAGCCAACCAGCCAGCCTacccaccaaccaaccagccagtcagccagccagccagcgcTCCACTCACTGCCTGCCTGCGGTCGGTCGGCTTCAGCTATGGAGGCGGACGGGAGCCAAGCCACATCTGGGAGTCCTAACGATTCACAACACGACCCGGGCAAAATGTTCATCGGTGGCCTCAGCTGGCAAACTTCACCAGACAGCCTTAGAGACTATTTTAGTAAATTTGGAGAAATCAGAGAATGTATGGTGATGAGGGATCCCACGACCAAACGCTccagGGGATTTGGGTTCGTTACGTTTGCGGATGCGGCCAGTGTAGATAAAGTCTTAGGTCAACCTCACCACGAATTAGACTCAAAGACGATTGACCCTAAAGTTGCCTTCCCAAGACGTGCTCAACCCAAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGATTATCAGCTAACACAGTAGTTGAAGATGTGAAGCAGTATTTCGAACAGTTTGGCAAGgTAGAGGATGCCATGCTTATGTTTGATAAAACCACAAATAGGCATAGAGGATTTGGCTTCGTAACTTTCGAGAATGAGGATGTGGTGGAGAAAGTCTGTGAGATTCATTTTCAtgaaatcaataataaaatgGTAGAATGTAAGAAGGCCCAACCCAAGGAGGTGATGTTTCCTCCGGGGACGCGAGGGCGAGCCAGGGGTTTGCCCTACACCATGGACGCCTTCATGCTAGGAATGGGCATGCTGAGTTACCCAAACATCGTAGCGACGTACGGCCGCGGATACACTGGCTTCGCCCCGAGCTACAGCTACCAATTCCCTGGTTTTCCTGCGACAGCGTACGGTCCCGTGGCGGCGCCGGCAGTGGCAGCAGCGCGTGGCTCAGGTAGGGCGGCCCGTGGAAGAGGCGGCTACGCAGCATACCCGCACAGCACAGGGCCAGGCTTCCCCGATTATGGTTTCTATTCCTCGCCAAGTGACCAACGGGGGCCCCCCTTCTCCTTTGCGGACTATGGCTCCTTGGGCCCGCAGGCGGCTCAGCTGCTGCAAAGCGAGCATGCCACCTCCGCCTGCAACTCCCCCCTGCAGCACCTGCCCAGCCCGGATCAGTATAAGAGCCCAGGCACCAACCCTCCTCGGCCTGGAGCCTTCCCCGGAGCCAGCAGCCCCGGCCCTGTGGCTGACCTCTACGGCCCCGCCAGCCAGGACTCTGGAGTGGGCAATTACATAAGCGCTGCTAGCCCCCAGCCCGGCTCCGGTTTCGGCCACAGTATCGCCCAGAGTTTATCAGGAGGTCCGGGGAAGGCAGGCCGGAGTTTCTAATTGGTTCTGTGTACAGGTAACGGCCATACAACTTCAAGCACTACAGAGAGGAACAGCGGAAGAACAGCTGAGATGGCACCACTtgaagaacaaaagaaaagtcTGAATCCGAATCAtctctgaaaaagaaaaaaaaaaaagatctgctgTAC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5093 lncRNA upstream 76950 15120734 ~ 15134707 (+) True G3800
TU5085 lncRNA upstream 141855 15069430 ~ 15069802 (+) True G3794
TU5078 lncRNA upstream 175075 15035942 ~ 15036582 (+) True G3788
TU5077 lncRNA upstream 176470 15034766 ~ 15035187 (+) True G3787
TU4973 lncRNA upstream 366033 14841868 ~ 14845624 (+) False LOC107197063
XR_002649787.1 lncRNA downstream 21559 15639346 ~ 15655321 (+) True LOC111192011
XR_002650144.1 lncRNA downstream 42423 15660210 ~ 15664348 (+) True LOC111192856
TU5273 lncRNA downstream 145457 15763244 ~ 15772504 (+) True G3894
TU5242 lncRNA downstream 176996 15794783 ~ 15797303 (+) False LOC103040601
TU5246 lncRNA downstream 176996 15794783 ~ 15826103 (+) False LOC103040601
XM_022667531.1 mRNA upstream 25262 15167460 ~ 15186395 (+) True akap1
XM_022667617.1 mRNA upstream 25262 15170340 ~ 15186395 (+) False akap1
XM_022667568.1 mRNA upstream 25262 15173865 ~ 15186395 (+) False akap1
XM_022667167.1 mRNA upstream 48701 15072842 ~ 15162956 (+) False LOC103023550
XM_007236888.3 mRNA downstream 91693 15709480 ~ 15729311 (+) True LOC103029544
XM_022668895.1 mRNA downstream 113692 15731479 ~ 15774952 (+) False LOC111192347
XM_022671384.1 mRNA downstream 115500 15733287 ~ 15762061 (+) True LOC103028185
XM_022668890.1 mRNA downstream 152490 15770277 ~ 15774952 (+) True LOC111192347
XM_022668835.1 mRNA downstream 163851 15781638 ~ 15797309 (+) True LOC103040601
XR_002649582.1 other upstream 49383 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 165273 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 172743 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 248074 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2227388 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 925155 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 1001259 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 1001259 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2454177 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2783267 18401054 ~ 18401125 (+) True trnaw-cca