RNA id: XM_022668890.1


Basic Information

Item Value
RNA id XM_022668890.1
length 2790
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC111192347
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15731479 ~ 15774952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttAGTTAGTGGGGTGTCCTGGTGTTGGGCGCAGTGCCGCTCCGCGCCAGTGGGCTGCAGCAGTGAGCCGCGTCGCCCTCCCGACAGAACAGTCCCACAGAGAGCACAGTAACGGCAGGCCATTGTACAGCCTGCCACTGTTTATATGATATAAACACAGCCTTCTCTTTACAGGCTGAAAAATACACACGATGTCTCTTCTGGAGTCTCGAGTGTTTTCTATCCTGCAGGATCTTGTTGAGGCCACGGTAAACAGCATGGCCAGAGCTGAGGATGAATCACTGCTGGATCAGTTTAAAGAGAGCCACTCTCTGAACCAGCCAGCTGCAGTAAAGGCTCAGCTGAACACTGTCCTCGAAATGCACATAAAGGAAGCGGTGGAGAAGGTCTGCAGGCTCTTTAGTGACAATTCAGCAGTTTTACATCTGCCTTTAACTGAGAATCAGACTACACAGGATAACCTCAAGATGGAACCAAAGCTGGAGATGAGTCATGAATCTGTGACAAGTAGCATGCAAGGATCTCCTGAGGAGATCATAGCTGTTGGCCCTCCGAGTTGGAAAGAAGAAAATAGTGGAGATCTTGACCAACCTGAGTCACTTGATGCTTTCCTCTCAACAGCACAGCAGTCAACATGATGGGTAGTCTGATGCTcattaaagaagaagaaattcCTGAACAGATCCAGGAGAATGCTATGGACGAGGAAACATTGCAGATCAAGGAAGAAGAACAAATGATGGAACTCATTAATCCAGGACTGGTTGATATTTGTATTGTAACGGTAGGGACAGAAGTGAATGCAGTTACAGATTTACCCAACGTAAGAGAGGTGGGGTGCATAAAGACACAGAGAATCTGCTGTAAGATCTGCAAAAGAACCTTCAGCAAGCTGCTTCATCTCAAAGCTCACATGGCTCTCCATGCCGCTGTAAGCTGTCTACAGTCTAATAAGAGTTTCGTTAAGAAACGTGGATTGAATGCACATCAGACATTAAGAAAAAAGAGTGGAAAGAGGAACGAGTGGAAAGAGGGCTTTAGCTGTGAGAAATGTGGAAAGAAGTACGTATTTCAGAAAGCTCTAGAACGTCATCAGCTGACAGGttgtgaaaagaaaaaggagCTGCGTCGCTGCCAAACGTGCGGCAAGAGCTTCATTGACCTGGAGAGTCATGAACGCATCCATTTGCAAGTGAAGCCATTCCTTTGCGGCGTATGTGGAAGAGGCTTCACTCTAGAGTACGTCCTGAAAGCACACCAGCGGCTCCATACAGGCGAGAAGCCGTACCAGTGCAAATTATGTGGCAAACGCTTCACTCAGTCAAGTACGCTTTTAATCCACAAGGGGACACATACGGATGAAAAGCCATGGAGTTGCGAGCTCTGTGACAAGACCTTTAAACGGCGGGCCAATTTGAGGAAGCACCAGGTAGTTCACTCTGGAGAGAAGCCCCATACATGCGATACCTGCGGGCAGAAGTTTAGACACCGGGAGAACCTGAGAAGGCACATGCGTAATCACCTGGGCATAAGGCCGTACAAATGTGAGACGTGCGGTAAGCGCTACAGTCAGAAGAGCTCGTTGAAGGAGCACATGCCAGTGCACGGAGCGTCCAAGCCTTTCATGTGTGAGAAATGTGGCAAGACATTTGTGTACAATTACACACTCAGAAATCACATGCGAACACATGAAGGTTCTGTCGAAGAGTCGGAGAAGAAACCCCAGCGCTGCGATGTCTGCGGCAAGTGCTACAGCACCACTTATACTCTGAAAATGCACCAGAGGATTCATTCTGAAAGTGATCCTCTCACCTGTAAGGTATGCGGCAAGACCTTCAGCAGCACAGCAGGCCTTTACACACACGAGCAGCAGCACTCTGGGCTGAATGCGTCCGAATGTGTAATATGCAAAAAGACATATGTCAGCAAAGCCTCTCTGAAAGTGCACATGCTCCTGCACAATAATGAGAAACCCTACAAATGTTCCTTTTGTCCAAAGGCCTTCAAGCTGGCCAACGGACTGAAGATGCACATGCTTGTTCACACCGGGGAGAAACCACACAAGTGCGACATATGTGGAAATTCATTCCGCTCCGCCGGAAACTTAAGCAGACACAAACGcgttcacaccggagagaagccGTTCAGCTGTGAAATCTGCGGAAAAAGCTTCAGCCAGCCTAATAATGTGAGGGCCCACATGCAGATTCACACTGGAGTCAAACCGTACAGCTGTCAGAAGTGTGGGAAGAAGTATGCTTATCTTAGGAATTACAACGATCACAAATGTATGTGATGCAGTGCCTAGCCTTAGCCATTTAATATGGTCTTGCTGTTTAATGTGCTTTGAAggtttttttataaactttttttctagTGTTACGATTTAAACACTTGAAATAGGCAATGCCTTGTAGTTATTTGATAAATGTAATTTAGCCTCAGCAGACTGTTCAAAACTGTGTACAGAATGAAGGTGAATACATTTTCTCAtataaagaatgaatgaatgtttttaaaaaaagggtttttacTCCCTACATACTGTGCTCcatatattgttacatttgcCTGAGACACATTAATATCCATTAACCCAGACAGATTCAAGTTGTAATTATTGTGTATAAATACTACAAAGTTACAGGAAAATGCCTAGTAAACCATTTAACATGTAATAACATTACAACATTTACCATAAACACGATCTCTCTTGTAttgacatgtaaaaaaaaaaggtcaacaCTGCATTGAAAAGATTTAATAAAGTGAAGATTCAAGTGTAGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650144.1 lncRNA upstream 105929 15660210 ~ 15664348 (+) True LOC111192856
XR_002649787.1 lncRNA upstream 114956 15639346 ~ 15655321 (+) True LOC111192011
TU5122 lncRNA upstream 151106 15617118 ~ 15619171 (+) True G3808
TU5181 lncRNA upstream 233034 15536490 ~ 15537243 (+) True G3855
TU5164 lncRNA upstream 394634 15374631 ~ 15375643 (+) True G3840
TU5242 lncRNA downstream 19831 15794783 ~ 15797303 (+) False LOC103040601
TU5246 lncRNA downstream 19831 15794783 ~ 15826103 (+) False LOC103040601
TU5297 lncRNA downstream 111162 15886114 ~ 15888367 (+) True G3917
TU5583 lncRNA downstream 381560 16156512 ~ 16157533 (+) True G4120
TU5634 lncRNA downstream 518559 16293511 ~ 16310645 (+) True G4158
XM_022671384.1 mRNA upstream 8216 15733287 ~ 15762061 (+) True LOC103028185
XM_007236888.3 mRNA upstream 40966 15709480 ~ 15729311 (+) True LOC103029544
XM_022667930.1 mRNA upstream 152490 15211657 ~ 15617787 (+) False LOC103023867
XM_022668835.1 mRNA downstream 6686 15781638 ~ 15797309 (+) True LOC103040601
XM_007245999.2 mRNA downstream 115253 15890205 ~ 15892830 (+) True LOC103027482
XM_007245997.3 mRNA downstream 159556 15934508 ~ 15940392 (+) True LOC103026903
XM_022668904.1 mRNA downstream 170776 15945728 ~ 15952683 (+) True LOC103027191
XM_007245993.3 mRNA downstream 232713 16007665 ~ 16069129 (+) True LOC103025893
XR_002649582.1 other upstream 608003 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 723893 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 731363 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 806694 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2786008 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 767990 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 844094 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 844094 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2297012 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2626102 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile