RNA id: TU5634


Basic Information

Item Value
RNA id TU5634
length 3355
lncRNA type inter_gene
GC content 0.44
exon number 28
gene id G4158
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16293511 ~ 16310645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGATCCAGCAGCAGCTTAGGGTGAATCAAGGCTATAAAGTTCAGTGGCAAACGCTCAACTGcttaacattattaataacaaAAGCGTCACTATGAAAACATACCAACCAAAAGAGTAATACCGGTTTCTCTTGGCAGCCTAACTAAGATTCACTTACAGTTACGCTGCGGATGACGCCCGTCTGATTAACCACTCCTCCGTCTAGGAAAGTGTCCTTCACGCGCACCAAGATGTCTGTGGTCACCCAGTCACTGGAGGTCTGGTCAATATTGGAGCCAGGGGTATGGGGGTTGTAGCCACCTGGAGATGGAGCTCCTGGAGTCATTGGGCTGTATCCCACCGGGCTGGGGCTCGGACTGGCCTGGTAGGCCATGGGTGAGGGGGTGGGATGGTAGCTGGCAGGTGAGTGGGTGTTTTGGTAGCCCACAGGGCTGGGAGCCACTTGATGATAACTCTGAGGGCTGGGACTGGGTTGGTATGAGCCTTGTGGCGATGGTGCAGCATATGGAGAGTATTGGTCTGTATTGTACATTGCAGGAGTTCCAGGGGTCTGTGGATTGTACTGGGGGTTGACCTGTGGTGAGGGCACTTCTGGGTACCCAGGAGTCTGAGGATTAGGTGTCCCTCCATAACCTTGAGGGGACGGTGACGGCTCATCGTCATACCCAAACTCGTAATCATCATCCGGCCGTGACGGCGTGTTGGGATTGTTGGGGTCCCAAGCTCCACTCTGCCCAGGCGTTCTGCTTCCATCGTGCAGAGGAGTCTGAGAGCCGTAATGAGGGGTGCGGCTTCCATCGTGGAGGGGCGTCTGGCTGCCATACATGGGAGTACGTGACCCAGAGCCATACATGGGTGTCTGGGAGCCATACATTGGTGTCCGTCCGTGTGTGGAAGTCATTCCTCCTTGTCTCTTTGCACCAACGCTGGTCAGACGCTGGCGATCCACTGAAATGGTCTGGCAGGTCGAGTGGAGCTCTACTCGAGCTGTTGATTCTGTAGCATCTTTCACCACTCCAATATATCCCTTGTATGGTCCTTGAGAAATGCGGACTGTCTGCCCAATCAGATCATTGTCTCGTCTACCACGGCCACGCCCCATGCCGCCTCCACCACCTCCCCTCTGCATCTGACCCCCTCCTCCTGGGTGCATTGGACTGCTAATTCGTGGGCTCATGGGAGCAAATCCACCAACAGTGAAATTGGTCACATCTCTAGGCTTTGAACCACCAGCCAGGACAAGGTGGCGTGTCTTACAAACAAACATGCCGCCATTTTCAACCAGCTTCTTACAGTGAAGGAAGGCAAACCCCCTGAAGATGTGTCGAATCTCTCCCTCGCGCCCCGAATGTGGTCCATCTATAACTTTGACAATGTCCTTTACATGAATGTTGTTCTGCTCCGAGTCCAGAGCTACAGCAAAGCGGTTGTCCTTCCGCCTGTTCACTGCCTGATGCCGCACTGTTAACACCTTCCCGTGCATGTTGAGCACCTGAAAGGTCTCTCGTTCTAGCCGGACAATCACACCCACAGTCTGTGGATCTAACTGAATCAGCTCTCCCCACTCATGCTGACCTCCTGCATCCACGCCGGAGGCGGTCTCTGAGCACAGCTGCAAGTCCCTAGGCAAGACTTTgagCTCATGCATAGTGAGATCAGAGAAGAGGATGACAAAGTTCTCCTCCACTCGAACAATAAGACCCGTGTCACCTTCATAGCGGCCAGCAATAACTTTCACATGGTCACCCATACGGAAATACTTTCTCAACTCGTGAGCTGGAAACTCTAATGGGTcCTTCAGGTCCTCATGTTTGGGCATGATTGTTATCTTGTTGCCATCCACACTCAATATCTTTCCTTGAAGGTTGATCAACTCGCCCTCGCACACCTCCACATTGTCTCCTGACTGCAGGTTGTGCTCTCGCTCCTTTCCTGCTGTTTCAGTCACCACTTCCAGGTCAATGCCTTCAGGTTGATCCTCAAACTTCTCCAGCTCTGAAAGAGTTGGCTTAACTCCATCTGTGATCACTGCTGACATGGCAAAGCTTTTAAAGAGAAAGCCTTTACGACTGTATCGATTGGCTTCAAAGATCATGAAATCTCCATCATGGCTAACTTCCCCACCAAGAGACCTGATTTTCTCAGCATCGAAGAGCCGCTGAGGAGGTCTCTTGAACTTCTTCCTCTTAGCAAACCAGTCTTTCATGCTCATTCTTGCTTTGATTCGGTCCAGGTCAATCCGAGGAATCATTTTTAGTGAAATGGTATTTTGACTTGGCTCAACATAATCAAcCTGGGCGATGTCATCTTTGTACAGGCCTCTCTTAAGGCGGACCCAGGATTTGGGTTTCAGATTGGTCACTTCCTTGACTACTTTAAGGACATCAGTCATCTCCTTAATGGGCACCATTTGTTGGTTCCAGAAGCCCATTCGCAGGTTGCCGACTCCTTCGATGGCAGACTTGACATGAGTCTGTTTATAAGACTCAATGTAGATGTAGCCTTTCACATGTTCGGGAGCCACCACTGACTTGATTTGAAGTGGCGTGTCAGTGCACTGATACGCAATGAATTTCCTCATCAGCGCAATGGCAGTCGCTCTCTCCTCACCAATCTTACACTTAACAGTCCACAAGTTTGGATCCTTGACACCAGGGAGCAACTGCTGCTGAGTAATATCATCCGACAGATCTTCTGATCCTCCATAGAAATGTTCACCACCTGATGACTTGGCATATTTCCTCATGTAGTATTCCCCCAGGGCTTCCTCTCTGGAATCTCTCCAGAGATTCTGCAGCCTACGGGACCCAGAGTGATCCTCGTCCAAAGCCACATGATCAATGTTGGACACTTCAGCTTCCTCTTTTTCCAAAATATCTTCCGCTCCTTCCTCCCACTGATCCTCGTCTTCATACTCATCGTCCACATcGGCTTCATCCAAGATAAAGCCTCCGTGTCGAGGTTTCTTTCTTGGTCTGtcatcatcctcttcctcctcttcatcatactcctcctcatcttcctccaaatcttctccttcttcttctgcaGCTTTGTCACTTCCAGTTATACTTCGAGCTTCTTCTTCCTCATTCTCCTCGGCCTCCTCAGCCTCACTGCTCCTCTCACTCTGGTTGTCTGAAAAATCGCTGTCCTCACTGTCAGACATCTCTCCGCTTTACCGGCCAAAGAAGAGTCTCTGAAAGATAATACAGCTCCCCAGCACTGTTAACGCGCGCCGATCTCCAGTTATGTCCTTTTATTTCGCTGTTCTCTGCTTTTCTCCGCTCTGCTCTGCTTCAgagagcggtgtgtgtgtttcctcgACCACTCTTCTGCTTCCTACCGCCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5583 lncRNA upstream 135978 16156512 ~ 16157533 (+) True G4120
TU5297 lncRNA upstream 405144 15886114 ~ 15888367 (+) True G3917
TU5246 lncRNA upstream 467408 15794783 ~ 15826103 (+) False LOC103040601
TU5242 lncRNA upstream 496208 15794783 ~ 15797303 (+) False LOC103040601
TU5273 lncRNA upstream 521007 15763244 ~ 15772504 (+) True G3894
TU5643 lncRNA downstream 1296 16311941 ~ 16312669 (+) True G4164
TU5647 lncRNA downstream 3467 16314112 ~ 16314937 (+) True G4167
XR_002649857.1 lncRNA downstream 38962 16349607 ~ 16350551 (+) True LOC111192356
XR_002649856.1 lncRNA downstream 45637 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA downstream 46030 16356675 ~ 16365017 (+) False LOC111192355
XM_007245984.3 mRNA upstream 1391 16280969 ~ 16292120 (+) True LOC103022964
XM_007245980.3 mRNA upstream 16678 16271162 ~ 16276833 (+) True LOC103022345
XM_007245988.3 mRNA upstream 82006 16205897 ~ 16211505 (+) True dll3
XM_007245989.2 mRNA upstream 100943 16159758 ~ 16192568 (+) True timm50
XM_022668921.1 mRNA upstream 100943 16161349 ~ 16192568 (+) False timm50
XM_007245975.3 mRNA downstream 144039 16454684 ~ 16477105 (+) True LOC103047564
XM_007245974.3 mRNA downstream 171551 16482196 ~ 16530242 (+) False exoc3l2
XM_007245973.3 mRNA downstream 180414 16491059 ~ 16530242 (+) True exoc3l2
XM_015604961.2 mRNA downstream 220704 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA downstream 222445 16533090 ~ 16536523 (+) False LOC103030966
XR_002649582.1 other upstream 1131237 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1247127 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1254597 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1329928 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3309242 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 232297 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 308401 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 308401 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1761319 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2090409 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016912 False 4024 mRNA 0.48 29 NC_007126.7 20363859 ~ 20394765 (+)