RNA id: TU311685


Basic Information

Item Value
RNA id TU311685
length 557
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id G229274
representative False

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 481000 ~ 494237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAGTTCTGAGTGCTGGCCTCTGATTGGTGTATCTGCAGTGGGGGCAGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCAGTGGGGGCAGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCATGGGGGGCGGTCTCAGTTCTGAGTGCTGGCCTCTGATTGGTGTATCTGCAGTGGGGGCAGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCAGTGGGGGCGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCAGTGGGGGCGGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCAGTGGGGGCGGTCTCAGTCCTGAGTGCAGGGCTCTGATTGGTGTATCTGCAGTGGGGGGCGTCAGTCCTGTAGGCGGGTCAGTACTGACTCTGCTATTGCTCTGAGTGAActgtaggtggcgctctctGGAAACGCCTGCAGGAAATCCCGACCTTCCTCTATACTCTCCGCTAACAGAGGATCCAACGGAACAGaacctacagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311700 lncRNA downstream 5164 483899 ~ 486756 (-) True G229286
TU311701 lncRNA downstream 5164 483899 ~ 486756 (-) False G229286
TU311703 lncRNA downstream 5164 483899 ~ 486756 (-) False G229286
TU311706 lncRNA downstream 5164 483899 ~ 486756 (-) False G229286
TU311675 lncRNA downstream 90308 401180 ~ 401612 (-) True G229272
TU311677 lncRNA upstream 2052 494835 ~ 495959 (-) True G229273
TU311681 lncRNA upstream 2052 494835 ~ 495959 (-) False G229273
TU311723 lncRNA upstream 17074 509857 ~ 510167 (-) True G229293
TU311709 lncRNA upstream 31688 524471 ~ 528387 (-) False G229287
TU311711 lncRNA upstream 31688 524471 ~ 528387 (-) True G229287
XM_015602868.2 mRNA downstream 20956 452117 ~ 470964 (-) True LOC103036421
XM_022685600.1 mRNA downstream 71137 404550 ~ 420783 (-) True LOC103026596
XM_022685599.1 mRNA downstream 89316 309323 ~ 402604 (-) True LOC103022950
XM_022685590.1 mRNA downstream 342137 143901 ~ 149783 (-) True LOC111196372
XM_022685598.1 mRNA upstream 5486 498269 ~ 518817 (-) True LOC103036123
XM_022685588.1 mRNA upstream 35620 528403 ~ 546704 (-) False tbc1d24
XM_022685589.1 mRNA upstream 35620 528403 ~ 545045 (-) False tbc1d24
XM_022685587.1 mRNA upstream 35620 528403 ~ 545045 (-) True tbc1d24
XM_022685602.1 mRNA upstream 69123 561906 ~ 568087 (-) True LOC103029896
TU311617 other downstream 268607 173215 ~ 223313 (-) True G229233

Expression Profile