Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012184 |
| length | 3257 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_006196 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 42011285 ~ 42018948 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008202 | steroid metabolic process | biological_process |
| GO:0042572 | retinol metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006805 | xenobiotic metabolic process | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ko00140 | Steroid hormone biosynthesis |
| ko00380 | Tryptophan metabolism |
| ko00980 | Metabolism of xenobiotics by cytochrome P450 |
| ko04913 | Ovarian steroidogenesis |
| ko05206 | MicroRNAs in cancer |
| ko05204 | Chemical carcinogenesis - DNA adducts |
| ko05207 | Chemical carcinogenesis - receptor activation |
| ko05208 | Chemical carcinogenesis - reactive oxygen species |
| ko00199 | Cytochrome P450 |
| id | description |
|---|---|
| ZDB-GENE-030902-1 | Predicted to enable monooxygenase activity. Acts upstream of or within eye development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including digestive system; heart; immature eye; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Peters anomaly; anterior segment dysgenesis 6; breast cancer; glaucoma (multiple); and lung squamous cell carcinoma. Orthologous to human CYP1B1 (cytochrome P450 family 1 subfamily B member 1). |
| ensembl_id | ENSDART00000126013 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013669 | lncRNA | upstream | 148254 | 41859776 ~ 41863031 (+) | False | XLOC_006194 |
| TCONS_00013670 | lncRNA | upstream | 148254 | 41859778 ~ 41863031 (+) | True | XLOC_006194 |
| TCONS_00013415 | lncRNA | upstream | 149199 | 41859004 ~ 41862086 (+) | False | XLOC_006194 |
| TCONS_00013414 | lncRNA | upstream | 149278 | 41859004 ~ 41862007 (+) | False | XLOC_006194 |
| TCONS_00013413 | lncRNA | upstream | 150540 | 41859004 ~ 41860745 (+) | False | XLOC_006194 |
| TCONS_00012191 | lncRNA | downstream | 525012 | 42543960 ~ 42551434 (+) | True | XLOC_006202 |
| TCONS_00013416 | lncRNA | downstream | 800397 | 42819345 ~ 42819715 (+) | True | XLOC_006206 |
| TCONS_00013671 | lncRNA | downstream | 1571819 | 43590767 ~ 43610001 (+) | True | XLOC_006210 |
| TCONS_00012204 | lncRNA | downstream | 1631445 | 43650393 ~ 43659337 (+) | False | XLOC_006211 |
| TCONS_00012206 | lncRNA | downstream | 1637568 | 43656516 ~ 43659337 (+) | True | XLOC_006211 |
| TCONS_00012183 | mRNA | upstream | 70818 | 41917606 ~ 41940467 (+) | True | XLOC_006195 |
| TCONS_00012182 | mRNA | upstream | 188800 | 41819817 ~ 41822485 (+) | True | XLOC_006192 |
| TCONS_00012181 | mRNA | upstream | 984887 | 41022502 ~ 41026398 (+) | True | XLOC_006190 |
| TCONS_00012180 | mRNA | upstream | 1055686 | 40815012 ~ 40955599 (+) | True | XLOC_006188 |
| TCONS_00012179 | mRNA | upstream | 1235755 | 40770628 ~ 40775530 (+) | True | XLOC_006187 |
| TCONS_00012187 | mRNA | downstream | 105618 | 42124566 ~ 42143637 (+) | True | XLOC_006198 |
| TCONS_00012188 | mRNA | downstream | 226273 | 42245221 ~ 42265585 (+) | True | XLOC_006199 |
| TCONS_00012189 | mRNA | downstream | 290740 | 42309688 ~ 42350160 (+) | True | XLOC_006200 |
| TCONS_00012190 | mRNA | downstream | 387935 | 42406883 ~ 42472060 (+) | True | XLOC_006201 |
| TCONS_00012192 | mRNA | downstream | 583458 | 42602406 ~ 42617639 (+) | False | XLOC_006203 |
| TCONS_00012162 | other | upstream | 1683048 | 40327562 ~ 40328237 (+) | True | XLOC_006179 |
| TCONS_00012159 | other | upstream | 2041820 | 39969349 ~ 39969465 (+) | True | XLOC_006177 |
| TCONS_00012137 | other | upstream | 3733304 | 38226157 ~ 38277981 (+) | False | XLOC_006165 |
| TCONS_00012135 | other | upstream | 3860648 | 38150517 ~ 38150637 (+) | True | XLOC_006163 |
| TCONS_00012134 | other | upstream | 4336991 | 37674178 ~ 37674294 (+) | True | XLOC_006162 |
| TCONS_00012186 | other | downstream | 23278 | 42042226 ~ 42042342 (+) | True | XLOC_006197 |
| TCONS_00012203 | other | downstream | 1621011 | 43639959 ~ 43656324 (+) | False | XLOC_006211 |
| TCONS_00012209 | other | downstream | 2081897 | 44100845 ~ 44100965 (+) | True | XLOC_006215 |
| TCONS_00012210 | other | downstream | 2365329 | 44384277 ~ 44384393 (+) | True | XLOC_006218 |
| TCONS_00012213 | other | downstream | 2846646 | 44865594 ~ 44865710 (+) | True | XLOC_006223 |
