RNA id: CI01000004_07102190_07122451.mRNA


Basic Information

Item Value
RNA id CI01000004_07102190_07122451.mRNA
length 2326
RNA type mRNA
GC content 0.43
exon number 11
gene id CI01000004_07102190_07122451
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7101045 ~ 7122451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCACAGGTGAATGGGATCTAGCGTGTTGGCCATCAGCCAGTATTGGAGAGCTGGTCACCATCCCCTGTCCAAATTACTTCAGCCATGTCAGTGATCAGAGAGGAAACATATCGAAGAGCTGTACTGCCAATGGCTGGACAGAAATTAAGCCAGTTGTCGTTGCATTCAACTGTGGCTACGATCTAAATATCACAGAGGATGGAAACATGGGTGAATTCCTGGGCTCTGTGAGAATTGGATACACTATTGGTCACACTGTGTCTCTTATATCCCTCATTATTGCCATCATCATCCTGTGCTTTTTCAGAAAACTGCACTGCACAAGGAACTACATCCACATTCACCTGTTCATGTCTTTTATACTAAAGGCTGTGGCTGTAATAATGAAGGACGTAGTCCTGTATGGGGTGGTGGAACCTGATGACTGCCACCATGGATCTGTGGGCTGCAAGGCTGCGGTGGTTTTCTTCCAGTATGGCGTCATAGCCAGTTTCTTCTGGTTACTGGTGGAGGGTCTGTATCTGCACGCTCTCCTGGCTGTGTCCTTCTTCTCTGAGAGGAAGTACTTCTGGTGGTACATTCTCATTGGATGGGGAGTTCCGGGTGTCTTCATAACAATCTGGAGCATCACAAAAGTTTATTTACATGACATTGGATGCTGGGATTTTATTGACGATGGCCTGTGGTGGATTATACAAACCCCTACGTTGATAACGATACTGATGAACTTTATTCTCTTAATTTGTATCATACGGATACTTCGTCAGAAAATCAGTTGCCGGGATATTGGGAGAAATGAATCACACCAATACTCGAGACTTGCGAAATCAACTCTACTTTTGATTCCCTTGTTTGGAATAAACTATATAATCTTTGCCTTTATGCCTCATCACATCGAGTCTTATGTGCGTCTGGTGTTTGACTTGATCCTGGGGTCCTTTCAGGGATTTTGTGTGGCTGTCCTGTACTGTTTTCTAAATGGAGAGGTTCAGTCTGAGATTAAACGAAAGTGGAGGCGGTGGCACATGCAGAGATTTCTGGGAGCGGATACCAAATACCATCAGCCCTCAATGGCAAGCAACGGCCTCAACTTCAGCTCCCAAATCACCATGATGACGAAATGCAGCCCCAGCACACGTCGTGCTTCCGCCTGCCAAGATGATTTCTCCACCGTCTGAGTGCTGAGTGATGCTCCGTTTATAGCGGGACACAGAAACCAATGAATCCGTGCTGTACACGCACAGAAAGGCTGTCACCCGGACCCCCTCCATCTGCAGGTTGCAGCTCCGCCCTCATTCCTGTAGGAACTGCACATCTCACTGCTCAGCAGGAACATTAGGGAAACCATGCAGCACAAGGCTTATGGTGACGGTTTGGCATGTGATGTATCTTCATAGCCATCATTTCAAACACATCGATCAGGAGAGAAATATGCAAGTAAAATGGACTCTTTGACGTCTGATTGTGTTTCATCAAACTACTGACTCTGGACAGCGTGGGACGCTGAATTTAGGACAAGGATGCGATCAGAGTGTTTTTGTGGTCCCCATCCATTGCCTTATTTTTGTGCACAACACCACAGGCATTAATCTTGTAGTTGGTATCTGTCATGTTTTTCTGTTTCCCCTGCCCTCATTATGCTGCTCAAGATTTCTCAGACTCTTACTAATCTGTACAGCTGAATGGTGACCTTTTAGGTCTCTAGTGACCAGGTTTTATTTTTATCTCCTTCCTTATTCCAGGAAAAAAATAATGTGATTTTGACATTCTGACATTCTGCTACAATCCTGTTTTTGCACCCTTTCCATGTGTCTCGTGCTTGCGTGTCTGTGTACATGTGGACAAACACTCTCAATTGAGAGTCATAAAAGCAAGTTTGCTTGTGCAGCTGAAGTATAGTGCATTGTTCTATATTTTTATGATAGTGATTTATAGTGTTATTGTATAGTTCTATGTTAAAATGTACACGGGTTGTGTAACTGTGCACTGTTGCATAAAGACAGTTGTGTGAGATGCATTTTTATGAGATTGGTCTTTCTAAAGAGGATATTTAGTCCAAAATCTTTTTAGCTGTCAAAAGTGCATATTGTTAGTCATAGTTGCTGACATGATAATGCTCCTGCATGTTTGCATGCACAGTTCTTGTACCTTAGTGAATAAGATGTACACTTAAGAGAAAATCGCTATAAGAAAATGTCGCTATAAGAGTGTTGTTGCTGTTTTTTTTTTTTGTTTGTTTGGGGTTTTTTTTGAAAGTGTATTGTGGATGTTGAAAGTATAGTTTTAATTTCAACATTAGATCTTAGTAGGCTTTCCTATTAAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04589 VIPR1; vasoactive intestinal peptide receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33359 lncRNA downstream 3065 7097742 ~ 7097980 (-) True G29476
TU33334 lncRNA downstream 123436 6977386 ~ 6977609 (-) True G29451
TU33320 lncRNA downstream 136708 6964133 ~ 6964337 (-) True G29441
TU33202 lncRNA downstream 139556 6957988 ~ 6958437 (-) True G29331
TU33310 lncRNA downstream 203790 6897021 ~ 6897255 (-) True G29433
TU33233 lncRNA upstream 26731 7149182 ~ 7150510 (-) True G29358
TU33381 lncRNA upstream 135288 7257739 ~ 7257963 (-) True CI01000004_07256668_07257382
TU33383 lncRNA upstream 136754 7259205 ~ 7259458 (-) True G29492
TU33385 lncRNA upstream 138193 7260644 ~ 7260971 (-) True G29494
TU33386 lncRNA upstream 138909 7261360 ~ 7261574 (-) True G29495
CI01000004_07091217_07093407.mRNA mRNA downstream 7638 7091200 ~ 7093407 (-) True CI01000004_07091217_07093407
CI01000004_07055639_07067152.mRNA mRNA downstream 33893 7055410 ~ 7067152 (-) True CI01000004_07055639_07067152
CI01000004_07024832_07032532.mRNA mRNA downstream 67884 7023693 ~ 7033161 (-) True CI01000004_07024832_07032532
CI01000004_07008022_07016495.mRNA mRNA downstream 83567 7007828 ~ 7017478 (-) True CI01000004_07008022_07016495
CI01000004_06960750_06963258.mRNA mRNA downstream 137763 6960675 ~ 6963282 (-) False CI01000004_06960750_06963258
CI01000004_07142439_07146139.mRNA mRNA upstream 19976 7142427 ~ 7146611 (-) True CI01000004_07142439_07146139
CI01000004_07152468_07158014.mRNA mRNA upstream 30017 7152468 ~ 7158261 (-) True CI01000004_07152468_07158014
CI01000004_07161002_07162898.mRNA mRNA upstream 38238 7160689 ~ 7163368 (-) True CI01000004_07161002_07162898
CI01000004_07172745_07186598.mRNA mRNA upstream 49798 7172249 ~ 7186959 (-) True CI01000004_07172745_07186598
CI01000004_07200551_07206146.mRNA mRNA upstream 77909 7200360 ~ 7206146 (-) True CI01000004_07200551_07206146
TU33263 other downstream 469138 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 555473 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1473531 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1897321 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 841913 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1232047 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1232047 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2255486 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3623986 10746437 ~ 10750641 (-) True G31203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030798 True 2812 mRNA 0.41 13 NC_007113.7 21229909 ~ 21300115 (+)