RNA id: TU33383


Basic Information

Item Value
RNA id TU33383
length 254
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G29492
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7259205 ~ 7259458 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCGTCTAAGAAGTTTGACCGACGTAAAAGTGCAAACCCCAAAACCCTTTTGTTCATTTTATATTATAAAAAAAAATACTCAATAACTTCACTGTTATTAAAAATATTAAATACATTGTAATGCCATCAAATTCAGTAAGCAATTATCATGCAAAAGCTGTTGTATGTAAGCTGTGTACCAACATCATTTGTGTAGGCCTTTATATGCTTCTTGCCAAACTAAGTGTTGTAGTACCTATTACCATCAGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33381 lncRNA downstream 1242 7257739 ~ 7257963 (-) True CI01000004_07256668_07257382
TU33233 lncRNA downstream 108695 7149182 ~ 7150510 (-) True G29358
TU33359 lncRNA downstream 161225 7097742 ~ 7097980 (-) True G29476
TU33334 lncRNA downstream 281596 6977386 ~ 6977609 (-) True G29451
TU33320 lncRNA downstream 294868 6964133 ~ 6964337 (-) True G29441
TU33385 lncRNA upstream 1186 7260644 ~ 7260971 (-) True G29494
TU33386 lncRNA upstream 1902 7261360 ~ 7261574 (-) True G29495
TU33398 lncRNA upstream 28457 7287915 ~ 7288131 (-) True G29507
TU33399 lncRNA upstream 28825 7288283 ~ 7288519 (-) True G29508
TU33391 lncRNA upstream 58133 7317591 ~ 7320735 (-) True G29500
CI01000004_07256668_07257382.mRNA mRNA downstream 725 7256365 ~ 7258480 (-) False CI01000004_07256668_07257382
CI01000004_07209004_07224321.mRNA mRNA downstream 34884 7208677 ~ 7224321 (-) True CI01000004_07209004_07224321
CI01000004_07200551_07206146.mRNA mRNA downstream 53059 7200360 ~ 7206146 (-) True CI01000004_07200551_07206146
CI01000004_07172745_07186598.mRNA mRNA downstream 72246 7172249 ~ 7186959 (-) True CI01000004_07172745_07186598
CI01000004_07161002_07162898.mRNA mRNA downstream 95837 7160689 ~ 7163368 (-) True CI01000004_07161002_07162898
CI01000004_07266248_07272453.mRNA mRNA upstream 6742 7266200 ~ 7272453 (-) True CI01000004_07266248_07272453
CI01000004_07327597_07330648.mRNA mRNA upstream 68139 7327597 ~ 7330648 (-) True CI01000004_07327597_07330648
CI01000004_07331060_07339831.mRNA mRNA upstream 71417 7330875 ~ 7339831 (-) True CI01000004_07331060_07339831
CI01000004_07388945_07408147.mRNA mRNA upstream 129003 7388461 ~ 7408147 (-) True CI01000004_07388945_07408147
CI01000004_07424499_07454604.mRNA mRNA upstream 164157 7423615 ~ 7454604 (-) True CI01000004_07424499_07454604
TU33263 other downstream 627298 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 713633 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1631691 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2055481 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 704906 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1095040 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1095040 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2118479 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3486979 10746437 ~ 10750641 (-) True G31203

Expression Profile