RNA id: CI01000004_07424499_07454604.mRNA


Basic Information

Item Value
RNA id CI01000004_07424499_07454604.mRNA
length 4507
RNA type mRNA
GC content 0.50
exon number 36
gene id CI01000004_07424499_07454604
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7423615 ~ 7454604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGAGGGTCCAAGGGTCATCTAGTGCTCACTGAGCTAATTGGCGTTCCTCTTCCTCCATCTGTGTCCTTCATCACTGGCTACGAGGGTTTCCCTGCCTACAATTTTGGGCCTAATGCTAATGTAGGCCGACTGACCCAGTCCTTTGTACCTGAGCCCTTCTTCACGGACTTTGCCATTATTGTCACCCTCAAGCCCTCCAGCTCTCGAGGAGGGGTCCTGTTTGCCATCACAGATCCCTCCCAGAAGATTGTGCACCTGGGCTTGGCCCTGACACCTGTAGAGGACAAGACCCAGAGGATTGTACTCTATTACAGCGAGCCAGGGTTTGCTGACACCATGGAGGTGGCTTCCTTTAAAGTGCCTGACATGACACAACAGTGGAACCGCTTCACGCTGACGGTGAAGAATGAGGAAGTTCGGCTCTATATGGACTGTGAGCAGTACCACAGCGCACCCCTGAAGAGAAGCAAGCAGCCCCTCAGCTTTAAGACAGGCTCGGGCATCTTTGTGGCAAATGCGGGCAGTACTGGCCTGGAGAGATTTGTGGGGTCTATCCAACAACTGGTGATAAAACCGGACCCCAGGGCAGCAGAAGAGCAATGTGAGGAGGATGACCCCAGCATTGAAAGAAATAATGTATCTATGGGGATGATGCTTGTAGAGCTGGCACTCCCTCTTGTGGTGGAGTTGTTCATGGCGTGCAAAGCAGGCTCACTGCTGAATGTTTTGCAGGGGGACAGAAGTGGTGATGGTGAGGGTGTTGATGATGAAGAAGAGCATGGGAGACATAACGGACTCTTTGGTCTGGCAAACGAGAGAGAAGATAAAGAAAAGACACATAGACCCACCATTCCTGTGCAAGCCCCACCCACTGTATCACCTGAGGTGGAAGAGGGGGAGTTCTCAGGATATGTGACCCCTAAAGACGAACGTCCATTTGGAGGGAGTTACAAAACACATGAAATGGAGGAGATTACAGATCGTTCAGGCCAGGGACAAAAAGGGGAACGTGGAGCACCTGGACCTGCAGGCCCCCCGGGACCACCTGGACCTCCTGGACCATCTCTCCCACCCAGAGATTCAGGTCAGCTTGGAGAGAGAGGCCCACAAGGTCCACCAGGAGGACCAGGGAAAGATGGGCAACCTGGAAGCAAAGGTGAAGAAGGAAAACCAGGGCAAAGAGGACCGCCAGGACCTCCAGGATTACCTGGAGAATCTGGAATTAAAGGAGAAAAGGGTGATCCTGGGATGGGTGAACCTGGATTGCCTGGTCCACCAGGGCCTCCCGGCCCACCAGGGCTATCCAAACCAATTAAAGTTCCATATGGATTTGATGCTCTCGGCTCTGGATTTGGAGATGTTGACATTGATACAGAACGTCTTAGAGGTCCACCTGGTCCTCCAGGCCCTCCTGGGAAACCTGGCCCACCTGGTACTAATGGCTCCTTTGGGGGTTTGCTGACTGGACCTCCAGGTGCCCCTGGCAAGGATGGCAGAGATGGGCAACCTGGACTTCCTCTGTTTGAGGACTGGTTTAGTGGGTCTGGCACTGACTCTGGGTTTGGCTCAGGGTTTGGCTCGGGTTTTGGTAAAGGACAGACATTGCCCTGGTTCGTTCAGGTCACTGAACCAGGAGTTCCTGGTCAGGAAGGCTTAAGTGGACAACAGGGTCCAAAAGGAGCAAAGGGTGAAAATGGTGACCCTGGCCTGAGAGGTCCACTTGGCCCTATTGGACCTATGGGGCCCAGGGGTGTACCTGGACCACCTGGCCCTCCTGGCCCACCAGGGCCCTCAAGCAATAACTTCAAGGTGGACACTTTGAAGGATTTGGAGGGTTCTGGTGAAAGCGGAATGTTTCTCGGAGCCGGAATTTCAAAAGGCTATCAAGGTGAACCAGGATTGCCAGGACCTGATGGAAAACCCGGATTAGCTGGTTTACCAGGAGTCAGGGGGCCAAAGGGAGACAAGGGCAGTCCAGGAAAGAAGGGTGAGCGAGGTCATGATGGACTGAGCATCACAGGGCCTCCCGGCCCCCCTGGCCCTCCTGGACCAATCGTTAACTTTCAGGATCTCTTTTTTAATGATACAGCAGCCAAATTAAACCTCACTAAGATCCGAGGACCGCCAGGCCCTATGGGCCCTGAAGGTTTGCCTGGCAGAGCAGGATTTCCTGGCCCAAGGGGACCAAAAGGTGAAATTGGGTTTCCTGGTATTCAAGGACCTCCAGGACTGAAGGGAGACATCGGTCCCACTGGACGACCTGGGATTATGGGTCGGCCTGGAATAGTTGGAAGGAAAGGGGACAAGGGAGATGCTAGTGGTCCCCCTGGTCCACCTGGTCCACCTGGACCTCCAGGGCCACCAGGACGAGTGATTGGCCTCAATGGAGTCAACAACAACAATTCACAACAAGGCAATGGAAGAGTGCCATTTGGAGTCAAAGGAGAGAAGGGTGATGTAGGAAATCCTGGATTGCCAGGAGCTCCAGTGCCTATGTTTCCCCAAGATTATGTGGGTGCTAAAGGTTATAATGGCTACAAAGGGCAAAAAGGAGAGAAAGGGGATCCAGGTTTGCCTGGCACTCCAGGTCTCCCTGGGAGAGCAGGCCTTGTGGGACCTAAAGGGGACTCTATTGTTGGCCCTCCTGGGGACACTGGTGCCCCAGGCCTGCCAGGACTGCCTGGGTATGGAAATCCAGGACCACAAGGGCCACCAGGACCACCTGGGCCACCAGGTACCCCGTCGGCATATGGCTCAGCTGCGAGTCTCCCTGGACCTCCAGGTCCTCCCGGGCCGCCTGGTGCTCCTGGCCATGGAAACCCTGTGAGCACATATAGAAACAGTCAGACCTTGATGAGAGAGACCAGTCGAGCTGCAGAAGGGACACTGGGATATGTTAACGACAACAGTGAACTGTACATCAGGCTAGGAGAGCTCATCCCAGTTCCCCAAGAGAGTTCCTCATCTGATTTGTCACAAGGCCTGAGCAGACCCAGCGACCACAGTGTACCCAGAGTTCACAGCCAGGAGTTAAAGAGCGTACTGCCAGGCTTCAATGTTCTTCCACACACTGCACACTCGATGCCTGCGTTGCACCTGGTGGCACTCAATACCCCATTCTCAGGGGACATGCGTGGAATCCGAGGGGCAGATTATCAGTGTTACCAGCAAGCCCGTACCAGGGGCCTGACATCAACTTACAGAGCTTTCCTCTCCTCTCACCTACAAGACCTATCTACCATCGTCAAGAAAGGGGACCGCTTCAACTTGCCAGTGGTGAACCTCAAAGGAGAAGTGCTCTTCGGCAGCTGGATGGCTATGTTCTCCGGCAATGGGGCTGTTTTTGATCCACTTACTCCGATTTACTCCTTTGATGGAAGAAATGTCATGACAGATCAGGCTTGGCCTCAGAAACTGGTGTGGCACGGCTCGAGTACAGTGGGCATCCGAGTAACAACTAACTACTGTGAGGCATGGCGGACGGGTGACGTGGCGGTGACCGGACAGGCATCTCTTCTGCAGACCGGCAGATTGCTCGGGCAGCACACACGTAGCTGCTCAAACCACTTCATTGTGCTTTGCATTGAGAACAGCTACATCCAGGACCCTGGAAGGAACTAGAAAGCTGACCATTTTAAAGTAAAGTAATGCAGATGTAGGGAGCAGCAGTAGCTGGACTGCTAGGGGAAATATCCAATCTACTCTTTTTTTTATTTTTAGGGATAGAGTTCCTGTGAGAAGCAACAAGCCAGGGAAAATGGCACTGCAATCATGTTTCAGTTCTTCTCTGAGCATGGTGTAAATATGTATAAATCACCCACTGATATTGTTCAGTCAGCGCCCCACCAACTTTTATTCAACTATTAGAATACCAAAGAATACCTCAGCCAGACATCAAGCAAGTGTAGATCCATTGTATGAATTCACTGCATTACTGTGTGTCTTCTCAGATGGTCTCAGTCCCTCCTTAAAATGACTAATACAGAGTTTTGTGTGTGTATAATATTAACTACGAAATTAAAACCACAAACATCAATAGACACAAGATGCTTTCTTTTAATCAGACTAAATACCAATATTTAGATATCAGTATTTGGATATATTCAAACAACAGTTTTGGAAGTTGTTTAAATGCACTATATTAATAATTTCTTGTGTTTTTTGGGTTAGAGTTTTTCATGAAGCTACTTTCTGTGAACTTGCATTTAAACTCGTATTTAAAAGAGGAAAAATGTCTAATTTATCATGTAAAAGCACATAAAACTAAAATCCAGTGCCAAGTACATACTTACATAGGCATTCATTTCAAAAGTTGACAGTGGCCACAACCACATTATAACTCTTCACTGTGTTTAATCTTTCTATAATGACATATTTAGAAAGACAAAATAGAAAATAAGATACATTGTTTATCTTCTAGAAGCCGGGTATAATTATGATACAAGGATAGAGAGACACCTCCCCCTTTCTTTTTTTTCATATTTGAATGGTGCTCAGTGAATAAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33217 lncRNA downstream 35759 7387581 ~ 7387856 (-) True G29343
TU33205 lncRNA downstream 36218 7385073 ~ 7387397 (-) True G29334
TU33402 lncRNA downstream 100724 7322651 ~ 7322891 (-) True G29511
TU33391 lncRNA downstream 102880 7317591 ~ 7320735 (-) True G29500
TU33399 lncRNA downstream 135096 7288283 ~ 7288519 (-) True G29508
TU33474 lncRNA upstream 75522 7530126 ~ 7530335 (-) True G29568
TU33482 lncRNA upstream 97928 7552532 ~ 7554333 (-) True G29575
TU33505 lncRNA upstream 211153 7665757 ~ 7665994 (-) True G29598
TU33457 lncRNA upstream 305054 7759658 ~ 7761020 (-) True G29551
TU33449 lncRNA upstream 320669 7775273 ~ 7780067 (-) False G29544
CI01000004_07388945_07408147.mRNA mRNA downstream 15468 7388461 ~ 7408147 (-) True CI01000004_07388945_07408147
CI01000004_07331060_07339831.mRNA mRNA downstream 83784 7330875 ~ 7339831 (-) True CI01000004_07331060_07339831
CI01000004_07327597_07330648.mRNA mRNA downstream 92967 7327597 ~ 7330648 (-) True CI01000004_07327597_07330648
CI01000004_07266248_07272453.mRNA mRNA downstream 151162 7266200 ~ 7272453 (-) True CI01000004_07266248_07272453
CI01000004_07256668_07257382.mRNA mRNA downstream 165135 7256365 ~ 7258480 (-) False CI01000004_07256668_07257382
CI01000004_07481146_07504328.mRNA mRNA upstream 26129 7480733 ~ 7504328 (-) True CI01000004_07481146_07504328
CI01000004_07606787_07617579.mRNA mRNA upstream 152094 7606698 ~ 7617579 (-) True CI01000004_07606787_07617579
CI01000004_07621014_07632760.mRNA mRNA upstream 166321 7620925 ~ 7632760 (-) True CI01000004_07621014_07632760
CI01000004_07646516_07653787.mRNA mRNA upstream 191310 7645914 ~ 7653787 (-) True CI01000004_07646516_07653787
CI01000004_07656773_07666677.mRNA mRNA upstream 201587 7656191 ~ 7666677 (-) True CI01000004_07656773_07666677
TU33263 other downstream 791708 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 878043 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1796101 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2219891 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 509760 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 899894 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 899894 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1923333 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3291833 10746437 ~ 10750641 (-) True G31203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032228 False 3738 mRNA 0.55 43 NC_007113.7 23937824 ~ 24022085 (-)