RNA id: TU33391


Basic Information

Item Value
RNA id TU33391
length 2646
lncRNA type read_through
GC content 0.36
exon number 2
gene id G29500
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7317591 ~ 7320735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATATCAGTTTCATTCTTTATTGATTATTATTAAAAATAATTGGTTACACATGCACTGAAAATCCCAAAAAGTGAAATACTATACAGTGTTCTACCATTGTCCTTAACACACCATACTGTGAGTGACAGTAATACCTCCATTGCTGTTGTGTCGTGAAAGTTCAATCCTTGCAGTTCAATGAGATAAAAACATGAAAAACAATTGAAAAGACACTAAATTTTTTTAATTGGAAACACTTAAATATTCCACTAAAATGGAGCTAATCCCTCTTTGAAACTCTTTGAGACCTGCATACATGTGCTTGGTGTGAAAATACAGCAGCCCTCCAGACTGATGGAATGACCTTAGACAACTCACCTCAACACAGAAACATCACCAGAGAGAAAAACAGAAGCATGGAGAGATCAACAAGATCTGATGTGTCAATCTGAAGAAAAATCAGCTGATTTAATTATCTTTAAGAATTCATACAAATGAGAAACCAGAATATGCTTTCGATTTTCAAAGTGCTCAGATGAATTACTTCCAATGAACTCCAGGAAAGGGCCAACCACTTGTGCACACGTGAAAATAAATACTTCATATCACTATCACTGAAGAAAAAGAAAAAGAGTCAAGGATGTATCTTACAAAGAAAAAAGGAAAAATAGTTGAGACTGTTGTTGAGGCTTTAGAGAATCAACAGCATTTTTGACAGTCAAATAAATGAAATCATTGCGTTCAGGCTTTGACTTGACAGTCTAATTAAGGTCTCTGAGATATCTAAAAAATAAAATTACAATGATTACAGTAAGGTGGCATGCCATTGTAATGAGTTGTTACCCATTTAAACATACAAACACACAAAACTCACATACCACAAGCATTCTTTTTAAGAATCCCACCAACCAGTCCAACAATGACGACCAAACAAAGACAGCAAGGCAGAAACCGAAATGCAGGAAAACAAAAATAGACCGCCATTGTTGACAAAGTAGAACTCAGAACATAAAAAAAAAAAACACTCAAGTCATGCTAATGTAATCTTTTATGGGTGACATTTTCAGTAATGAAACCCTTTGAGCGAAGTGTTGCGTTTTTTTGACTACGAACAGAGAGAAGACAACAAAAAAAAAAGACATGAGACAAACCACCACGTCGAGTCCATAGAAAGGCCAACTGTGAACGGTATGTATACTGTTTATATTATATATAAACAACACCAATTTCATTATTTACATGTTTTTTTTTTTTTTATCAAGTACTCATTAAGATGCCCCACCCACATTCATTGTTGTATTCACACTAAATATATTTAAAAAATAATAATAATTCAAGTCATTTGCACATACACACAAGTGCGAAAGTGACAGCGAATGAATCACTGACCATGTCTACAATTAATCGGTTTTAAAACCACCTTTAAATTAACTGTTTGTTGGAAGCCAAGGAGGGAAATTAACTGGAAAAAAATAAAAAAATGAAATGAGGTGGAGTGAAAAACCTCACTAAAATTAATAATAATAAACCCAGTAAAGGGTGAGCAAAAACAATAAAATACCAGTTGCATGTGAACACATTTTCTGCCTATATATACATGGAATCAGACATCAGTCTACAGCTGAGACAAATGATATTAAGCAAATGTAATGGACTTAAATATTTACAGACACACCAATATAGACCCACAAATTCTACTGCCAATATCACTTGGACACCGCATGGGTCCTAAAGTCACTTCTCTTTAGTTTTTTGCTGGCTTCACTGGTTTTCACTTCATCAACAGTGCTTGTTCATGTTTTTTTAAAAAGCTCATCTCATCTCTCTTGCAACTTCTGTTTTCATGGAAAGCCCATTCAACAAAGTCAAATGAGAGCAAAATGATCAGCATATCTTAAGTCAAAAATCATTCATGCAGTCTGGCATTAGCCCATGCAAAACGATGGGAATGTATCCCGATAGTGAGAGAGCAGCTGAAATGTGTAACTGTGAGGTGCAGTGCACAGGTGTAACAGTGAAGCATCATGAGTTGTGGGTGACGTGGCTCCCATGTTTACTGGTTAATGTGTAAAACCGTACAATGTAGATCGCTCCAAAATGACGGACCACATTGCATTGTACTGAACAGCTGACTTTTTATAGGCGGTCCAACATGCACCCTTAAATGCTATCGAATGACAATCCTCCCCTCTATCCTCCATTGAGGTACACAGCTGAAAGCACACACAGTCACTCATTCGTTTCACAGATGAGATCCACAGCTACTGTTTACCTACAGTTGTAAATTCAGTAGTACTATCGAAAGTAAGGCATTCTTCTTTTTGACATCTACCAGTATTAGGAGTTGGTTCAGATTGTGCAAATGTTTAAAGCAACAGAAAAAAACAAAACATACATGAATACTGTAAACATCTGAGGTGCGCTCGTATGAAGAACTCGGATGCAGTCCTATTCAACATTTGTTAATCCTATGTGGTGTCAGATTCCTTCTGTCTCTTTGGCAGTAGTGGTTTCTTTAGGCCAATGAAAGCATTTACAATGCACTGTTGTGCAAACAAGTCTGTTTTTTTCCCGGTTGCTGGTAATACTTTGTTTTAACTTATACTCAGCTGAGCAAATCCCATGAGTTTAACGTCATCTGGAATTTCAGAGCTGTCCACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33399 lncRNA downstream 29072 7288283 ~ 7288519 (-) True G29508
TU33398 lncRNA downstream 29460 7287915 ~ 7288131 (-) True G29507
TU33386 lncRNA downstream 56017 7261360 ~ 7261574 (-) True G29495
TU33385 lncRNA downstream 56620 7260644 ~ 7260971 (-) True G29494
TU33383 lncRNA downstream 58133 7259205 ~ 7259458 (-) True G29492
TU33402 lncRNA upstream 1916 7322651 ~ 7322891 (-) True G29511
TU33205 lncRNA upstream 64338 7385073 ~ 7387397 (-) True G29334
TU33217 lncRNA upstream 66846 7387581 ~ 7387856 (-) True G29343
TU33474 lncRNA upstream 209391 7530126 ~ 7530335 (-) True G29568
TU33482 lncRNA upstream 231797 7552532 ~ 7554333 (-) True G29575
CI01000004_07266248_07272453.mRNA mRNA downstream 45138 7266200 ~ 7272453 (-) True CI01000004_07266248_07272453
CI01000004_07256668_07257382.mRNA mRNA downstream 59111 7256365 ~ 7258480 (-) False CI01000004_07256668_07257382
CI01000004_07209004_07224321.mRNA mRNA downstream 93270 7208677 ~ 7224321 (-) True CI01000004_07209004_07224321
CI01000004_07200551_07206146.mRNA mRNA downstream 111445 7200360 ~ 7206146 (-) True CI01000004_07200551_07206146
CI01000004_07172745_07186598.mRNA mRNA downstream 130632 7172249 ~ 7186959 (-) True CI01000004_07172745_07186598
CI01000004_07327597_07330648.mRNA mRNA upstream 6862 7327597 ~ 7330648 (-) True CI01000004_07327597_07330648
CI01000004_07331060_07339831.mRNA mRNA upstream 10140 7330875 ~ 7339831 (-) True CI01000004_07331060_07339831
CI01000004_07388945_07408147.mRNA mRNA upstream 67726 7388461 ~ 7408147 (-) True CI01000004_07388945_07408147
CI01000004_07424499_07454604.mRNA mRNA upstream 102880 7423615 ~ 7454604 (-) True CI01000004_07424499_07454604
CI01000004_07481146_07504328.mRNA mRNA upstream 159998 7480733 ~ 7504328 (-) True CI01000004_07481146_07504328
TU33263 other downstream 685684 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 772019 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1690077 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2113867 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 643629 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1033763 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1033763 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2057202 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3425702 10746437 ~ 10750641 (-) True G31203

Expression Profile