RNA id: TU33398


Basic Information

Item Value
RNA id TU33398
length 217
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29507
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7287915 ~ 7288131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAGCGTTTCTCAAAACCAATGGTCTCCATGATCAACTTAGCTCATGATGCTTTTGAGAAACGCAGCCCAGGAAATGATGCATAACTCAACTTTCATCTGGGAAACCTCTAGAAGTTCATATAATACATTTTAACAATTAGAATTTCAACTAAAAGCCATTATTTCATGTTCATTTATTTATTTGTAAGCAGGTGTATAATAAACTGAGTAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33386 lncRNA downstream 26341 7261360 ~ 7261574 (-) True G29495
TU33385 lncRNA downstream 26944 7260644 ~ 7260971 (-) True G29494
TU33383 lncRNA downstream 28457 7259205 ~ 7259458 (-) True G29492
TU33381 lncRNA downstream 29952 7257739 ~ 7257963 (-) True CI01000004_07256668_07257382
TU33233 lncRNA downstream 137405 7149182 ~ 7150510 (-) True G29358
TU33399 lncRNA upstream 152 7288283 ~ 7288519 (-) True G29508
TU33391 lncRNA upstream 29460 7317591 ~ 7320735 (-) True G29500
TU33402 lncRNA upstream 34520 7322651 ~ 7322891 (-) True G29511
TU33205 lncRNA upstream 96942 7385073 ~ 7387397 (-) True G29334
TU33217 lncRNA upstream 99450 7387581 ~ 7387856 (-) True G29343
CI01000004_07266248_07272453.mRNA mRNA downstream 15462 7266200 ~ 7272453 (-) True CI01000004_07266248_07272453
CI01000004_07256668_07257382.mRNA mRNA downstream 29435 7256365 ~ 7258480 (-) False CI01000004_07256668_07257382
CI01000004_07209004_07224321.mRNA mRNA downstream 63594 7208677 ~ 7224321 (-) True CI01000004_07209004_07224321
CI01000004_07200551_07206146.mRNA mRNA downstream 81769 7200360 ~ 7206146 (-) True CI01000004_07200551_07206146
CI01000004_07172745_07186598.mRNA mRNA downstream 100956 7172249 ~ 7186959 (-) True CI01000004_07172745_07186598
CI01000004_07327597_07330648.mRNA mRNA upstream 39466 7327597 ~ 7330648 (-) True CI01000004_07327597_07330648
CI01000004_07331060_07339831.mRNA mRNA upstream 42744 7330875 ~ 7339831 (-) True CI01000004_07331060_07339831
CI01000004_07388945_07408147.mRNA mRNA upstream 100330 7388461 ~ 7408147 (-) True CI01000004_07388945_07408147
CI01000004_07424499_07454604.mRNA mRNA upstream 135484 7423615 ~ 7454604 (-) True CI01000004_07424499_07454604
CI01000004_07481146_07504328.mRNA mRNA upstream 192602 7480733 ~ 7504328 (-) True CI01000004_07481146_07504328
TU33263 other downstream 656008 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 742343 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1660401 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2084191 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 676233 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1066367 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1066367 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2089806 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3458306 10746437 ~ 10750641 (-) True G31203

Expression Profile