RNA id: TU33505


Basic Information

Item Value
RNA id TU33505
length 238
lncRNA type intronic
GC content 0.37
exon number 1
gene id G29598
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7665757 ~ 7665994 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCTTCACGTTCATTATGTTTGAATGCATTCACTTGAATCTATTATTGTGCTTAAAAGCTGCTAGAGCTATAGCGAGTGAAAGCATATTCATAATGTCACTCTGTTTAATGCAATTCTACGATATTTACCATAAATGGGCCTGAACACTTCACTTGGACTGAACTACCTCTGTTTGTCTAGTTCTTTCTGTCCTTAACTGTTTCTTGCATTTCGGTAATATCACAGAATAGCGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33482 lncRNA downstream 111424 7552532 ~ 7554333 (-) True G29575
TU33474 lncRNA downstream 135422 7530126 ~ 7530335 (-) True G29568
TU33217 lncRNA downstream 277901 7387581 ~ 7387856 (-) True G29343
TU33205 lncRNA downstream 278360 7385073 ~ 7387397 (-) True G29334
TU33402 lncRNA downstream 342866 7322651 ~ 7322891 (-) True G29511
TU33457 lncRNA upstream 93664 7759658 ~ 7761020 (-) True G29551
TU33449 lncRNA upstream 109279 7775273 ~ 7780067 (-) False G29544
TU33450 lncRNA upstream 109279 7775273 ~ 7780067 (-) True G29544
TU33446 lncRNA upstream 132556 7798550 ~ 7800281 (-) True G29542
TU33462 lncRNA upstream 134453 7800447 ~ 7800752 (-) True G29556
CI01000004_07646516_07653787.mRNA mRNA downstream 11970 7645914 ~ 7653787 (-) True CI01000004_07646516_07653787
CI01000004_07621014_07632760.mRNA mRNA downstream 32997 7620925 ~ 7632760 (-) True CI01000004_07621014_07632760
CI01000004_07606787_07617579.mRNA mRNA downstream 48178 7606698 ~ 7617579 (-) True CI01000004_07606787_07617579
CI01000004_07481146_07504328.mRNA mRNA downstream 161429 7480733 ~ 7504328 (-) True CI01000004_07481146_07504328
CI01000004_07424499_07454604.mRNA mRNA downstream 211153 7423615 ~ 7454604 (-) True CI01000004_07424499_07454604
CI01000004_07670856_07673369.mRNA mRNA upstream 4518 7670512 ~ 7673952 (-) True CI01000004_07670856_07673369
CI01000004_07693733_07699887.mRNA mRNA upstream 27490 7693484 ~ 7699887 (-) True CI01000004_07693733_07699887
CI01000004_07705722_07707545.mRNA mRNA upstream 39713 7705707 ~ 7707845 (-) True CI01000004_07705722_07707545
CI01000004_07712568_07742293.mRNA mRNA upstream 46484 7712478 ~ 7742293 (-) True CI01000004_07712568_07742293
CI01000004_07751113_07751701.mRNA mRNA upstream 84457 7750451 ~ 7751755 (-) True CI01000004_07751113_07751701
TU33263 other downstream 1033850 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1120185 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2038243 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2462033 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 298370 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 688504 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 688504 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1711943 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3080443 10746437 ~ 10750641 (-) True G31203

Expression Profile