RNA id: CI01000004_07705722_07707545.mRNA



Basic Information


Item Value
RNA id CI01000004_07705722_07707545.mRNA
length 1629
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000004_07705722_07707545
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7705707 ~ 7707845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATGCACTTTGAAAACAAATACAACTTTTAACCATACCTGCTGAAAAGACCATCAGCAAAGTCTAGTTGGTGAAGCTGTTGATTACTAAAATGCTTACACCAGCTTCTAAAACACAACATAGGCTTAAGTTATGTTTTTTTTTTTTTCATAATTCATACAGTTTTGATTATGTTTGAGAATGACTTTACATGTGTGAAGTGTGATTAAAATGAAAAGGTCTTATATTTGTTCTTAGTTTGATAGAGTTCTCTAAGATGTACAGCTGCTAGACTCTAATTTGCCCACTAGCTACAGCAAAATGACGGACCTCGGCAGATTATATTCAGATGACGTCTCATCCTCTCAAAGTGAAGATGTCAACAGAGCACATGCGGAGGAGGATCCCACAAAAATTCAGGATGATAACATTGAAGACTCAAGCTTCTCCTCTGATCGGGGCAGTTCAGCCAAGCAGAAGGACAACACAGAAGCTAAAAAGAAGACTAAAAAGAGTGTCTTTCTGAAACCATGGACTGGTGTGTTTAAGAAATGGAAGAAGACTGATTCTGAATCGCTTTCAACATCTTCAGGGGGAATTAAAATGCTACCCAATGGCACAAGATGTAGTCCGCCTGTTTCTCCATTGCTGGACAGAAAACATTGGGATGCTCGGGATGCTCTTTCTGGTGACCTCAAACCAAACTTTCCCCCAGGTTCAGGGGGATACACATATGACACCCTTGAATCCGAACTGACCAGTATCCATCCAGCAGAGTACTATGCTGAGAAGTTAGAAGTATACAAGTTAAAGTACTCCTACCTGAAGTCTTGGCCTGGCCTCTTAAGGCTGCTCGCTGGCCTTCAACTTGTATTCGGCGGGCTGGTTTTTGCCTGCGTATGCGCGTATATTCAGAGAGACAGTGAGTGGTCCAACTATTCAAGGCCAAATTATGGATTCACTGATATGAAAGGATACCGTTACACTGGACCCATGACAACTTTTGTGTTGGTCATTGTTGGACTCTCATGGATGCTGACCGTTATCCTGATGGTTTTGGGATTAACCATGTATTACCGAACGATCCTTCTGGATTCCAAATGGTGGCCTCTCACTGAGGCTGTTATTAATCTAGTCCTTTCGTTGTTGTACATGGCAGTGGGTATCGTCTATGTGAATGATTTGAATCGTGGTGGGCTTTGCTTCATGACGGTCGGTGTCAACCCAGTCCTGTCTAATCTGTGTCGTGTTGAGGGTGGTCAGATGGCTGGTACTGCATTTATGTTCATTAACATGCTCATGTACTTGATAAGCTTCTTGGTGTGCCTTAAAATGTGGAAGCATGAAGCTGCCCGCCGTCAGAGAGAGGGCTTGACCAGCCAGATGAGCAGCCAGTTACAGCAGCAGACTCTGGAATCCACATCCAATATGGGCAGCTCCTCGACTAGATCCAAGAAAATTTCATTCAAAGATGAAATGGATCAAAGCTCTGTGAATAAGAGCAGGCTGGCTTATGTCTCAGAGAGAGCTGAGGAGCGAAAGATTTTAACTGGAGCTATTCCAGTTGGACACATTCCTAAACCCAGAGTCGTCGCTGATTATGTTATGTTAGTATTCTTCATGGTGTATTTCTAGTCTAACAAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33505 lncRNA downstream 39713 7665757 ~ 7665994 (-) True G29598
TU33482 lncRNA downstream 151374 7552532 ~ 7554333 (-) True G29575
TU33474 lncRNA downstream 175372 7530126 ~ 7530335 (-) True G29568
TU33217 lncRNA downstream 317851 7387581 ~ 7387856 (-) True G29343
TU33205 lncRNA downstream 318310 7385073 ~ 7387397 (-) True G29334
TU33457 lncRNA upstream 51813 7759658 ~ 7761020 (-) True G29551
TU33449 lncRNA upstream 67428 7775273 ~ 7780067 (-) False G29544
TU33450 lncRNA upstream 67428 7775273 ~ 7780067 (-) True G29544
TU33446 lncRNA upstream 90705 7798550 ~ 7800281 (-) True G29542
TU33462 lncRNA upstream 92602 7800447 ~ 7800752 (-) True G29556
CI01000004_07693733_07699887.mRNA mRNA downstream 5820 7693484 ~ 7699887 (-) True CI01000004_07693733_07699887
CI01000004_07670856_07673369.mRNA mRNA downstream 31755 7670512 ~ 7673952 (-) True CI01000004_07670856_07673369
CI01000004_07656773_07666677.mRNA mRNA downstream 39030 7656191 ~ 7666677 (-) True CI01000004_07656773_07666677
CI01000004_07646516_07653787.mRNA mRNA downstream 51920 7645914 ~ 7653787 (-) True CI01000004_07646516_07653787
CI01000004_07621014_07632760.mRNA mRNA downstream 72947 7620925 ~ 7632760 (-) True CI01000004_07621014_07632760
CI01000004_07712568_07742293.mRNA mRNA upstream 4633 7712478 ~ 7742293 (-) True CI01000004_07712568_07742293
CI01000004_07751113_07751701.mRNA mRNA upstream 42606 7750451 ~ 7751755 (-) True CI01000004_07751113_07751701
CI01000004_07755406_07758041.mRNA mRNA upstream 47322 7755167 ~ 7758041 (-) True CI01000004_07755406_07758041
CI01000004_07784930_07788318.mRNA mRNA upstream 75839 7783684 ~ 7788507 (-) True CI01000004_07784930_07788318
CI01000004_07792267_07797908.mRNA mRNA upstream 84053 7791898 ~ 7798462 (-) True CI01000004_07792267_07797908
TU33263 other downstream 1073800 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1160135 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2078193 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2501983 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 256519 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 646653 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 646653 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1670092 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3038592 10746437 ~ 10750641 (-) True G31203

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032269 False 5427 mRNA 0.38 3 NC_007113.7 24400725 ~ 24407732 (-)