RNA id: TU33457


Basic Information

Item Value
RNA id TU33457
length 348
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G29551
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7759658 ~ 7761020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTATTCACAAAGACACTTTATTTCCAACTCTGCACAAATTATGTTGTACTGGCAATTGTAGAGCTGCTGTTGATATGCTCCACAAGTCCTGGTTTGGCCATGGCAGGTCTTCACACATGAACTGCTAGCGAAGCCTCCTGGCCTCTCTTTCAGACTCCAGAAGTGTCAGAACATCTCCTTCTCTTACTGGGCCCTTCACATTTCTGATGATGGATCGGTTGCTGTCATCCATGAACTCAACGCGCACCTGTGTACACTGTCCCTGGGAGCCGGTTCTTCCCAGTACTTTTGTAACTCTGGCGAGCTTGATGGGCTGCACGCGGCTGGCATCCATGATTTCAGCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33505 lncRNA downstream 93664 7665757 ~ 7665994 (-) True G29598
TU33482 lncRNA downstream 205325 7552532 ~ 7554333 (-) True G29575
TU33474 lncRNA downstream 229323 7530126 ~ 7530335 (-) True G29568
TU33217 lncRNA downstream 371802 7387581 ~ 7387856 (-) True G29343
TU33205 lncRNA downstream 372261 7385073 ~ 7387397 (-) True G29334
TU33449 lncRNA upstream 14253 7775273 ~ 7780067 (-) False G29544
TU33450 lncRNA upstream 14253 7775273 ~ 7780067 (-) True G29544
TU33446 lncRNA upstream 37530 7798550 ~ 7800281 (-) True G29542
TU33462 lncRNA upstream 39427 7800447 ~ 7800752 (-) True G29556
TU33458 lncRNA upstream 39937 7800957 ~ 7804228 (-) True G29552
CI01000004_07755406_07758041.mRNA mRNA downstream 1617 7755167 ~ 7758041 (-) True CI01000004_07755406_07758041
CI01000004_07751113_07751701.mRNA mRNA downstream 7903 7750451 ~ 7751755 (-) True CI01000004_07751113_07751701
CI01000004_07712568_07742293.mRNA mRNA downstream 17365 7712478 ~ 7742293 (-) True CI01000004_07712568_07742293
CI01000004_07705722_07707545.mRNA mRNA downstream 51813 7705707 ~ 7707845 (-) True CI01000004_07705722_07707545
CI01000004_07693733_07699887.mRNA mRNA downstream 59771 7693484 ~ 7699887 (-) True CI01000004_07693733_07699887
CI01000004_07784930_07788318.mRNA mRNA upstream 22664 7783684 ~ 7788507 (-) True CI01000004_07784930_07788318
CI01000004_07792267_07797908.mRNA mRNA upstream 30878 7791898 ~ 7798462 (-) True CI01000004_07792267_07797908
CI01000004_07805884_07817962.mRNA mRNA upstream 44633 7805653 ~ 7818936 (-) True CI01000004_07805884_07817962
CI01000004_07829094_07830772.mRNA mRNA upstream 67983 7829003 ~ 7830813 (-) True CI01000004_07829094_07830772
CI01000004_07960123_07960701.mRNA mRNA upstream 199084 7960104 ~ 7960863 (-) False CI01000004_07960123_07960701
TU33263 other downstream 1127751 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1214086 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2132144 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2555934 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 203344 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 593478 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 593478 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1616917 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2985417 10746437 ~ 10750641 (-) True G31203

Expression Profile