RNA id: TU33458


Basic Information

Item Value
RNA id TU33458
length 3272
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29552
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7800957 ~ 7804228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAGAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTCGGCTGAAGAAAGAAAGACATAAATATCTTGGATGACATGGCGGTAAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAAGTCAGAGGTCCAAAACGAAACATTTGGACCCCATTGACTTTTATTGTATGGAGAGGGAAAAAAAAGGCCACACGCTGAGACTTTGTTCAAAATATCTTCTGTGTTCCACAAAAAAAGAAAGTCATACAGGTTTTGAATGACATGAGAGCGACTAAATGATGACAGAACTTTCATCTTTGGGTGAACTGTCCATTTAAAATTTGCAGTATATGCACAGTTACTAACAATGTAAAAGGCAGTAACTAGTAAACAACTGCTTTGCATTAGAAAACTTTTTTTTGTGCCAGTAAAATGGTGGTGTTTTAAATCAACAGACTTATAATATATTCAATGTACAGTATGTAATGTTACAATATAACCTATGAGCACAGCCATGGTAACTGGTATAGTCAAAATGATGCTGCAAACTTTAACATTACTTGTAAGTTCCTTTGGCTTACTCAAAAAAGAAGCATGAAGACAGTACATGATCATGGCGATCGTTTGCATATATGTATCAGAACTAGTCACTGTGATAACCAGATTCTGCCTTACACTGAAGATGCAGTTCTTGTCCGTTTTGTTCTCCGTAGCTGAAGGTGTTTTCTGGTACTGTAAAAGTTGCTGTAACTCATGAGGTTGTCCTGGCGCACAGTTCTTATTTGTCTTCTGGTGGTCTCGTGATATCAAACGCCCAAAAGGGGAGGTTTACTACTCTTTTTAAATCCTGTCACATTCATCTTTTTCTCATTTTTCTCGGACTTTTATACTCTAACCACTTTTGTAAGTGTGAGAATTTTGTTTACAAAATTGAAAACATCTTAATGTTTAAATTATTGAAATGCTGAATATATATATATATATATATACGTATATTATAAAAAAATATTTTAAGAAATTTTGTTATCCGTGTAAAACTTCTCTACGTACAAGGGAATAATCGGATTTGGATTAATATCTATGCAAAGCATAATCAAACATACTAGATCACAAAAATTCTAAAGAAAAGGCTCAAACAGATGTACGGCTTTTACAGCATCTGTGGATTCTGAGTCCGTGCAGCTGAATTTTACTTGCTACATGGATTTTTTTTTTTTTTTGTCTGTTGTCAGCAAAAAGGGGGAAAAAAGAGAAACCGTTAATGGATGAAAAACGTTTGGATGCTCCGTAAGGGATTCTTTTTGTAAGGCATCTGATTGCACCGTGTAAATTTCCTGTATAAAAAAGCATGACCTACATGTGCTTTGTCTCAGACAATTGTTTTCATGAGGATCATGCTTCATGTGTTCAAAATGTAAAATAATTGACGGGAAGGATGTGTCAGGTAATCAGTTACTGCTATATTCCGTTACTTGACTGCCTCATCAAAAAGAACAGCATTGCTGGAACCAGAATGTATTTTGACACCTTTTATGTAGGACCAAACATATTACTGAAACTAGCATTATTTTTGTTACTGTGATGTTTGTGTACCTTTCCATGTGTTTAATAGTTGCCCTCTGCATTGTTGTGGCCCCTCCATTTCATTTGCAAGAGGCTGCATTGTACAGAGGCTCATAGCTATGGAGCTGTGAGCGTTTTTTATTTGATTTTATTTTATTTTTTATTTTGCATGTCTGACCATCACAAGTATTGGTGATTGATAAGCTGTGCACTTTTATCTCTTTGATATTTTATTTTACATCTCTATCTATGTGTTCTGCATTTGTGAACGTACTACATGAGAACACTTCCTACATTTACTTGGCACTTTAATCGATACCCAATCCATTTTTCCCAATCCATTCTTTTCACTACCCCCTCTGAGTGACTGTTAAGTGCACTGGGTCTATTTCCCCCCTCTGTTTGGCCGATTTTGCCTTCTACTCTAAGACAAGTATTTTTGAAAAGGATAAAAGTATCTGTTGTCTATTTATGATTTTATACTTGGTCAGCGCAAAAAAAATAAATAACTTTTTTATGTAGTGTTAGGAAAGTATGAAAGTTCCCCGATATTTAGGAAATGAAGGCAGGTTACCTTTCTCTGTGTCAATTCACCGTAGACCAGTTTACCTTTTATAAAGCTTCATCTGTGGATCATAGTGTATCATTACCATGAATTGAACCAATCCAGAACATTTCTGGTCCAGATAAGAGAACATGCAGAAAAAAAAGGTTCTTCATCATTGAATCCCATAACTTATTCAGTATCTAATGTATGCACAGCCTTCATGTACATAAATGCTACACTTATACATTTCTATATTTTAAAATGTAAGAGTAGAGCGTAAAATATCAGGAGTATGTAAAAAAAAAATATATATATATATATATATAAATTAAATGAACAATATGGAACTGTATGTTTTTACATTTTAAAATGCTTGAAGTGGACGCTATACTGTCCCTCCGTTCAGGGGTTTCACACTTTCCTCAAACTCATGTTTTAAATACACAGATTTGTGTTCATTATCAAGTGTGCTCACACTTCTAGCCAAATCATAAAAGAATCCCTGCTGCAAATGTACATGCAGTTTTGCTTTACAGCTTCTATACACTGAACCTTGTTGAAGCTTTGTGAAATAATATTCTCTTATGTCTTTGTTTTGTAGTATTTGCAGTAGAACTATTTGTTTCTGGTTGATATTCTTTTATTTTGTGTTTTATGTGTGTGCATTGGGAATTGATGTTTAAGTACTGTAAAAGTTGTCTTCACATGCTCAAGGTCTGTTTGCTGCAATGTGTTGTAGGTCTGTGATTTCTTTGCAGTGGTTGCTTTATCCACTCAGTTCCTAGATCTGATTTGTAGGCCAGTTTTCTTAGATTCAGAAATATTTTCACAAGTGTCCTCCTTATGCAGAAAAATAAGATATCTTTATTTTGCAGGATACTACGGAGCCCCGCACATGACATGCGGGACAAAAATATATGTATTGTGGCCACAAATTAAGAATTTGTTCTCTCATTTTATGAAATTGTGGCCATGATTTACTAATTCGGTCACTCGTTTTGAGTGATTTTGAACTAAAACAAGGGAACGAATTATTAAAAAGTGGCCATGGTTTAGTAAAACGAGGTAACTAATTATATAGTGTGCAGGACTTAAAAGGTTAGTTCACCCAAAAATGAAAATTTCTGTCATTAATTACTCACCCTCATATCGTTCCAAACCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33462 lncRNA downstream 205 7800447 ~ 7800752 (-) True G29556
TU33446 lncRNA downstream 676 7798550 ~ 7800281 (-) True G29542
TU33449 lncRNA downstream 20890 7775273 ~ 7780067 (-) False G29544
TU33450 lncRNA downstream 20890 7775273 ~ 7780067 (-) True G29544
TU33457 lncRNA downstream 39937 7759658 ~ 7761020 (-) True G29551
TU33515 lncRNA upstream 17614 7821842 ~ 7822063 (-) True G29608
TU33517 lncRNA upstream 30588 7834816 ~ 7836818 (-) True G29610
TU33468 lncRNA upstream 95130 7899358 ~ 7904097 (-) True G29562
TU33565 lncRNA upstream 154518 7958746 ~ 7961208 (-) True CI01000004_07960123_07960701
TU33441 lncRNA upstream 189006 7993234 ~ 7996737 (-) True G29539
CI01000004_07792267_07797908.mRNA mRNA downstream 2495 7791898 ~ 7798462 (-) True CI01000004_07792267_07797908
CI01000004_07784930_07788318.mRNA mRNA downstream 12450 7783684 ~ 7788507 (-) True CI01000004_07784930_07788318
CI01000004_07755406_07758041.mRNA mRNA downstream 42916 7755167 ~ 7758041 (-) True CI01000004_07755406_07758041
CI01000004_07751113_07751701.mRNA mRNA downstream 49202 7750451 ~ 7751755 (-) True CI01000004_07751113_07751701
CI01000004_07712568_07742293.mRNA mRNA downstream 58664 7712478 ~ 7742293 (-) True CI01000004_07712568_07742293
CI01000004_07805884_07817962.mRNA mRNA upstream 1425 7805653 ~ 7818936 (-) True CI01000004_07805884_07817962
CI01000004_07829094_07830772.mRNA mRNA upstream 24775 7829003 ~ 7830813 (-) True CI01000004_07829094_07830772
CI01000004_07960123_07960701.mRNA mRNA upstream 155876 7960104 ~ 7960863 (-) False CI01000004_07960123_07960701
CI01000004_07998445_08008810.mRNA mRNA upstream 194005 7998233 ~ 8008810 (-) False CI01000004_07998445_08008810
CI01000004_08010634_08013275.mRNA mRNA upstream 205631 8009859 ~ 8013275 (-) True CI01000004_08010634_08013275
TU33263 other downstream 1169050 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1255385 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2173443 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2597233 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 160136 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 550270 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 550270 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1573709 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2942209 10746437 ~ 10750641 (-) True G31203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU16609 True 539 lncRNA 0.35 1 NC_056700.1 11456326 ~ 11456864 (+)