RNA id: TU33515


Basic Information

Item Value
RNA id TU33515
length 222
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G29608
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7821842 ~ 7822063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAAAATGAGTTACATTTCATATTGATCAAACTGACGGTGACGGCTGCAAGTAGCTGCATTTATTAACAAACCAAAGAGCTATAACTAAACAATACTTTGAGCTAGCATTAAATATTAAATATGATATGCATCATGACACATCTGGGTAGACCCGACATCTAACTACACCTGGCAGACAGAAAGTTTTTTCTTCATTAAAGTTGGGAACTGAGAATTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33458 lncRNA downstream 17614 7800957 ~ 7804228 (-) True G29552
TU33462 lncRNA downstream 21090 7800447 ~ 7800752 (-) True G29556
TU33446 lncRNA downstream 21561 7798550 ~ 7800281 (-) True G29542
TU33449 lncRNA downstream 41775 7775273 ~ 7780067 (-) False G29544
TU33450 lncRNA downstream 41775 7775273 ~ 7780067 (-) True G29544
TU33517 lncRNA upstream 12753 7834816 ~ 7836818 (-) True G29610
TU33468 lncRNA upstream 77295 7899358 ~ 7904097 (-) True G29562
TU33565 lncRNA upstream 136683 7958746 ~ 7961208 (-) True CI01000004_07960123_07960701
TU33441 lncRNA upstream 171171 7993234 ~ 7996737 (-) True G29539
TU33574 lncRNA upstream 201888 8023951 ~ 8025200 (-) True G29663
CI01000004_07805884_07817962.mRNA mRNA downstream 2906 7805653 ~ 7818936 (-) True CI01000004_07805884_07817962
CI01000004_07792267_07797908.mRNA mRNA downstream 23380 7791898 ~ 7798462 (-) True CI01000004_07792267_07797908
CI01000004_07784930_07788318.mRNA mRNA downstream 33335 7783684 ~ 7788507 (-) True CI01000004_07784930_07788318
CI01000004_07755406_07758041.mRNA mRNA downstream 63801 7755167 ~ 7758041 (-) True CI01000004_07755406_07758041
CI01000004_07751113_07751701.mRNA mRNA downstream 70087 7750451 ~ 7751755 (-) True CI01000004_07751113_07751701
CI01000004_07829094_07830772.mRNA mRNA upstream 6940 7829003 ~ 7830813 (-) True CI01000004_07829094_07830772
CI01000004_07960123_07960701.mRNA mRNA upstream 138041 7960104 ~ 7960863 (-) False CI01000004_07960123_07960701
CI01000004_07998445_08008810.mRNA mRNA upstream 176170 7998233 ~ 8008810 (-) False CI01000004_07998445_08008810
CI01000004_08010634_08013275.mRNA mRNA upstream 187796 8009859 ~ 8013275 (-) True CI01000004_08010634_08013275
CI01000004_08030758_08033803.mRNA mRNA upstream 208448 8030511 ~ 8033803 (-) True CI01000004_08030758_08033803
TU33263 other downstream 1189935 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1276270 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2194328 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2618118 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 142301 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 532435 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 532435 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1555874 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2924374 10746437 ~ 10750641 (-) True G31203

Expression Profile