RNA id: TU33754


Basic Information

Item Value
RNA id TU33754
length 200
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G29829
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8358903 ~ 8359102 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAATAGATTCAGAATTCCTCAAAATGAATCAAAACAATGAAATGCAAACCTGGAATAATAAACTCCAGGTTTGGAATTTAATCTAGGCCTAAACCAAGATTAAGCCTTCAATTATGGCATTTAAGTAGCTTTTATAGACGTTCACTAGAAAAAAGAAAAGAAAAAAAAAAAAAACATTGCTGATGTGCATCTTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33675 lncRNA downstream 19357 8337169 ~ 8339546 (-) True G29750
TU33578 lncRNA downstream 272873 8081875 ~ 8086030 (-) True G29667
TU33574 lncRNA downstream 333703 8023951 ~ 8025200 (-) True G29663
TU33441 lncRNA downstream 360589 7993234 ~ 7996737 (-) True G29539
TU33565 lncRNA downstream 397695 7958746 ~ 7961208 (-) True CI01000004_07960123_07960701
TU33759 lncRNA upstream 10048 8369150 ~ 8371242 (-) True G29833
TU33771 lncRNA upstream 51624 8410726 ~ 8411072 (-) False G29844
TU33772 lncRNA upstream 51624 8410726 ~ 8411219 (-) False G29844
TU33770 lncRNA upstream 51634 8410736 ~ 8411072 (-) False G29844
TU33773 lncRNA upstream 51634 8410736 ~ 8411219 (-) True G29844
CI01000004_08258929_08273708.mRNA mRNA downstream 85104 8258778 ~ 8273799 (-) True CI01000004_08258929_08273708
CI01000004_08249849_08251049.mRNA mRNA downstream 107596 8249668 ~ 8251307 (-) True CI01000004_08249849_08251049
CI01000004_08233410_08241216.mRNA mRNA downstream 117584 8233178 ~ 8241319 (-) True CI01000004_08233410_08241216
CI01000004_08113788_08117378.mRNA mRNA downstream 240824 8113374 ~ 8118079 (-) True CI01000004_08113788_08117378
CI01000004_08103263_08106420.mRNA mRNA downstream 252483 8103263 ~ 8106420 (-) True CI01000004_08103263_08106420
CI01000004_08361560_08363939.mRNA mRNA upstream 2166 8361268 ~ 8364019 (-) True CI01000004_08361560_08363939
CI01000004_08587419_08590454.mRNA mRNA upstream 228225 8587327 ~ 8590557 (-) True CI01000004_08587419_08590454
CI01000004_08592797_08594424.mRNA mRNA upstream 233212 8592314 ~ 8594619 (-) True CI01000004_08592797_08594424
CI01000004_08714010_08716995.mRNA mRNA upstream 354780 8713882 ~ 8717059 (-) True CI01000004_08714010_08716995
CI01000004_08847888_08849951.mRNA mRNA upstream 487656 8846758 ~ 8850028 (-) True CI01000004_08847888_08849951
TU33669 other downstream 776 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 776 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 393403 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 1726996 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1813331 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 1018835 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2387335 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 3048363 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 3417417 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 4017066 12376168 ~ 12384780 (-) True G32207

Expression Profile