RNA id: TU39656


Basic Information

Item Value
RNA id TU39656
length 538
RNA type TUCP
GC content 0.58
exon number 3
gene id G34934
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16401745 ~ 16421506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCGTGCTCTCGGTCCAGCTCAGTCACCGTAGTGATGAGCCCAGTGTCTGGAGTGATCCGGAACAGAGCTTCTGGGTCAGACTGAGGATCGATGGAGAACCTGATGTTGTTTGTGAGCCCTGTATCTGGGTCCACGGCACTGATCCGCCCCACTGTGCACGCCGGTGGGCAGTTCTCAGACACATCCATTCGGTACCGTGCCCGTGAGAAGCGAGGGGGCTCATCTGCATCCAGCACAGCCACTCTGATCGAGGCGCGGTCTTTGAAGGGCCCACGCCGCAGGAATCGAGGGTCCACGATGGGATTCAGCACCTCCACTGAGAAAGAGTAGGAGCTACGGCTCTCATAGTCCACCGCCTTGTTCAGAATGATCACGGCCTCTTGGTTGGCTCCGGTGATGTTAAAGGTGTCCCCTGACTCTCCATCCAGGATGGTATACTCCAGCTTGGCATTGTCTCCCAAGTCAGCATCTGTTGCTGAGATCCGACCCACCTCCGCCCCTGCCACGGCCAGCTCTGACACAGAGAACAGCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39580 lncRNA downstream 99645 16236890 ~ 16302100 (-) True G34869
TU39579 lncRNA downstream 165102 16236357 ~ 16236643 (-) True G34868
TU39578 lncRNA downstream 167456 16233832 ~ 16234289 (-) True G34867
TU39577 lncRNA downstream 168034 16233311 ~ 16233711 (-) True G34866
TU39564 lncRNA downstream 254027 16146748 ~ 16147718 (-) True G34854
TU39675 lncRNA upstream 13469 16434975 ~ 16442439 (-) True G34950
TU39677 lncRNA upstream 22787 16444293 ~ 16444530 (-) True G34952
TU39692 lncRNA upstream 51555 16473061 ~ 16473289 (-) True G34963
TU39732 lncRNA upstream 108251 16529757 ~ 16533008 (-) False G34995
TU39733 lncRNA upstream 108251 16529757 ~ 16533008 (-) True G34995
CI01000004_16202928_16216455.mRNA mRNA downstream 184985 16202850 ~ 16216760 (-) True CI01000004_16202928_16216455
CI01000004_16183581_16194877.mRNA mRNA downstream 206868 16183022 ~ 16194877 (-) True CI01000004_16183581_16194877
CI01000004_16160899_16178772.mRNA mRNA downstream 222601 16160357 ~ 16179144 (-) True CI01000004_16160899_16178772
CI01000004_16155534_16158067.mRNA mRNA downstream 243678 16155372 ~ 16158067 (-) True CI01000004_16155534_16158067
CI01000004_16152238_16154327.mRNA mRNA downstream 247418 16151733 ~ 16154327 (-) True CI01000004_16152238_16154327
CI01000004_16449696_16450112.mRNA mRNA upstream 26910 16448416 ~ 16450248 (-) True CI01000004_16449696_16450112
CI01000004_16455194_16455607.mRNA mRNA upstream 33591 16455097 ~ 16455970 (-) True CI01000004_16455194_16455607
CI01000004_16459173_16459658.mRNA mRNA upstream 37464 16458970 ~ 16461331 (-) True CI01000004_16459173_16459658
CI01000004_16596848_16599652.mRNA mRNA upstream 174970 16596476 ~ 16601205 (-) False CI01000004_16596848_16599652
CI01000004_16626200_16639382.mRNA mRNA upstream 204430 16625936 ~ 16639382 (-) True CI01000004_16626200_16639382
TU39503 other downstream 537997 15860613 ~ 15863748 (-) True G34796
TU39241 other downstream 565514 15833158 ~ 15833275 (-) True G34569
TU39318 other downstream 613848 15787386 ~ 15787897 (-) True G34633
TU39411 other downstream 1120096 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 1311387 15087179 ~ 15090358 (-) True G34638
TU39713 other upstream 81219 16502725 ~ 16515974 (-) True G34982
TU39734 other upstream 107936 16529442 ~ 16533008 (-) False G34995
TU39739 other upstream 115689 16537195 ~ 16541278 (-) True G34999
TU39636 other upstream 157161 16578667 ~ 16617614 (-) True G34916
TU39797 other upstream 274265 16695771 ~ 16895093 (-) True G35053

Expression Profile