RNA id: TU41223


Basic Information

Item Value
RNA id TU41223
length 225
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G36290
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1659045 ~ 1659269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTATGATTCAAATTTGAAAGTTGAGCCCCCGAGAACCTTTACGACATGGTTTACGGCACTGATATCGAACGCTCATTGGTTCTCACCTGCTTCGTCACAGATTGCGACATGCCATGTTTCAGTGGATTGACATTTGAAATGAGTGCGCACCTTCACGGAGAGAAGCCGGATTCATATTTTCATGGATTAATAAGTTAAACTCTGCACTGTACCCCATAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41195 lncRNA upstream 356045 1302764 ~ 1303000 (+) True G36270
TU41169 lncRNA upstream 434435 1223766 ~ 1224610 (+) True G36244
TU41120 lncRNA upstream 441096 1217616 ~ 1217949 (+) True G36196
TU41118 lncRNA upstream 445622 1212900 ~ 1213423 (+) True G36194
TU41087 lncRNA upstream 480216 1178616 ~ 1178829 (+) True G36163
TU41229 lncRNA downstream 6616 1665885 ~ 1666118 (+) True G36294
TU41275 lncRNA downstream 65100 1724369 ~ 1727277 (+) True G36339
TU41297 lncRNA downstream 108154 1767423 ~ 1767898 (+) True G36361
TU41298 lncRNA downstream 108668 1767937 ~ 1768534 (+) True G36362
TU41300 lncRNA downstream 110869 1770138 ~ 1770340 (+) True G36364
CI01000005_01641148_01646936.mRNA mRNA upstream 11667 1641148 ~ 1647378 (+) True CI01000005_01641148_01646936
CI01000005_01587815_01629740.mRNA mRNA upstream 29175 1587698 ~ 1629870 (+) True CI01000005_01587815_01629740
CI01000005_01567956_01569421.mRNA mRNA upstream 88906 1567956 ~ 1570139 (+) True CI01000005_01567956_01569421
CI01000005_01460222_01467970.mRNA mRNA upstream 191053 1460222 ~ 1467992 (+) True CI01000005_01460222_01467970
CI01000005_01431961_01432725.mRNA mRNA upstream 225860 1431788 ~ 1433185 (+) True CI01000005_01431961_01432725
CI01000005_01748068_01748568.mRNA mRNA downstream 86849 1746118 ~ 1748654 (+) True CI01000005_01748068_01748568
CI01000005_01795371_01878902.mRNA mRNA downstream 136102 1795371 ~ 1878956 (+) True CI01000005_01795371_01878902
CI01000005_01902623_01902991.mRNA mRNA downstream 243354 1902623 ~ 1903066 (+) True CI01000005_01902623_01902991
CI01000005_01909422_01922476.mRNA mRNA downstream 249473 1908742 ~ 1922591 (+) True CI01000005_01909422_01922476
CI01000005_01966840_01968600.mRNA mRNA downstream 307290 1966559 ~ 1968954 (+) True CI01000005_01966840_01968600
TU41148 other upstream 121241 1503143 ~ 1537804 (+) True G36223
TU40375 other upstream 1135264 491908 ~ 523781 (+) False G35533
TU41224 other downstream 464 1659733 ~ 1661032 (+) True G36291
TU42433 other downstream 2063475 3722744 ~ 3723503 (+) True G37392
TU43730 other downstream 3076077 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU45244 other downstream 5338275 6997544 ~ 6998340 (+) True G39930
TU45443 other downstream 5938720 7597989 ~ 7598810 (+) True G40098

Expression Profile