RNA id: TU51272


Basic Information

Item Value
RNA id TU51272
length 116
lncRNA type sense_over
GC content 0.36
exon number 1
gene id G45111
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7460905 ~ 7461020 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCAATCAGCCCAGAGCGCGCACTGACTGTTTTCCTCTCCTGCCTGAAGAGATCCATTCAAACATGGTTCCTCCCGTACAGGTCTCCCCGCTTATCAAGACAGCAAGATGGTCCGCCTTGCTAATTGGATTAATTTATGGGAAGCAGAGATATGATTATCTGAAGCCCATTGCTGCTGAAGAAAGAAGGATTGAGGAGGAAGAGAAGAAACTCAGGGAAGAGCAAGAGCGCATTTACAAACAGCTATCTGAAGCAAACTCTGACACCATCCTGAAGTAAATCTCCATAATGTATTCATTCCAGCACCAGATGAGATAAATCACAATGAACCTAATTCTATTTTTCAATAAAGACGGAAATTAAAATGTT

Function

GO:

id name namespace
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component

KEGG:

id description
K02129 ATPeF0E, ATP5I; F-type H+-transporting ATPase subunit e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50991 lncRNA upstream 132452 7325698 ~ 7325942 (+) True G44859
TU50982 lncRNA upstream 137699 7320374 ~ 7320695 (+) False G44850
TU50981 lncRNA upstream 137699 7320441 ~ 7320695 (+) True G44850
TU50989 lncRNA upstream 138071 7320068 ~ 7320323 (+) True G44857
TU50988 lncRNA upstream 138461 7319715 ~ 7319933 (+) True G44856
TU51277 lncRNA downstream 11682 7472702 ~ 7472906 (+) True G45116
TU51281 lncRNA downstream 18289 7479309 ~ 7479512 (+) True G45120
TU51283 lncRNA downstream 20669 7481689 ~ 7481888 (+) True G45122
TU51295 lncRNA downstream 60138 7521158 ~ 7522043 (+) True G45134
TU51296 lncRNA downstream 61223 7522243 ~ 7522618 (+) True G45135
CI01000006_07328380_07352585.mRNA mRNA upstream 105257 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07254728_07260352.mRNA mRNA upstream 197960 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 207499 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07243073_07247934.mRNA mRNA upstream 210372 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07214841_07222648.mRNA mRNA upstream 235577 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07477200_07478617.mRNA mRNA downstream 15908 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07486574_07490054.mRNA mRNA downstream 24958 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 31167 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07577082_07582303.mRNA mRNA downstream 115378 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07692311_07693192.mRNA mRNA downstream 231220 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
TU51004 other upstream 70510 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 287860 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1329719 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1348806 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1686619 5770089 ~ 5771775 (+) True G43896
TU51341 other downstream 160971 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 422847 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 558322 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 698496 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 736861 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038456 True 557 mRNA 0.40 4 NC_007132.7 20377752 ~ 20381481 (-)