RNA id: TU53611


Basic Information

Item Value
RNA id TU53611
length 236
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G47148
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10493349 ~ 10495939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATGATGAACACCTGCTGTTAACAAGCAGAATCACTGAAGAAAAGAGAAACGCAAGAACTACAACTGACTTCAGCCAAAACCATTTAATTGAAATCAACTGAAGATAAAAGTCATTAAATCTCACTAGATCTGATTAAAAGATCTGATTCACTTATTACTAACCAGATTGACTTTATTTCTGTCACAAGTCTAAAGAAGTTCTTATTGAGAATTAACAGAGGTTTAGATGTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53599 lncRNA upstream 10184 10462462 ~ 10483165 (+) True G47140
TU53564 lncRNA upstream 12106 10403274 ~ 10481243 (+) False G47106
TU53558 lncRNA upstream 12106 10472740 ~ 10481243 (+) True G47106
TU53560 lncRNA upstream 14549 10447507 ~ 10478800 (+) False G47106
TU53566 lncRNA upstream 30925 10408876 ~ 10462424 (+) False G47108
TU53568 lncRNA downstream 12011 10507950 ~ 10508752 (+) True G47109
TU53709 lncRNA downstream 21772 10517711 ~ 10517922 (+) True G47217
TU53710 lncRNA downstream 70715 10566654 ~ 10567299 (+) True G47218
TU53712 lncRNA downstream 119386 10615325 ~ 10616018 (+) True G47220
TU53705 lncRNA downstream 169027 10664966 ~ 10672592 (+) True G47213
CI01000006_10363884_10364804.mRNA mRNA upstream 127778 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10177090_10192651.mRNA mRNA upstream 299830 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_09998680_10008491.mRNA mRNA upstream 484301 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_09918611_09921465.mRNA mRNA upstream 571556 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09910027_09913958.mRNA mRNA upstream 579245 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_10518326_10566504.mRNA mRNA downstream 22387 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
CI01000006_10574971_10578629.mRNA mRNA downstream 78669 10574608 ~ 10578964 (+) True CI01000006_10574971_10578629
CI01000006_10593624_10605226.mRNA mRNA downstream 97305 10593244 ~ 10606273 (+) True CI01000006_10593624_10605226
CI01000006_10707037_10743311.mRNA mRNA downstream 211005 10706944 ~ 10743594 (+) True CI01000006_10707037_10743311
CI01000006_10747943_10768998.mRNA mRNA downstream 252004 10747943 ~ 10769038 (+) True CI01000006_10747943_10768998
TU53040 other upstream 334098 10156579 ~ 10159251 (+) False G46652
TU51632 other upstream 1658652 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 2280961 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 2293204 8198844 ~ 8198909 (+) True G45351
TU51552 other upstream 2293647 8198844 ~ 8198909 (+) False G45351
TU53635 other downstream 920290 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 920290 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1128328 11624267 ~ 11638252 (+) True G47318
TU54708 other downstream 1781681 12277620 ~ 12279541 (+) True G48094
TU54695 other downstream 1881067 12377006 ~ 12384827 (+) True G48081

Expression Profile