RNA id: TCONS_00001153


Basic Information

Item Value
RNA id TCONS_00001153
length 2511
RNA type mRNA
GC content 0.53
exon number 20
gene id XLOC_000682
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52929185 ~ 53225121 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaagacAAAGAACACGAGATCCTGTTTTTCCCTCTGGAGTGAGCTTCCCACTTGATTGCCCAGTTTATAACGACACGTTCATCAAAGTCAGTGTCTATGGAGTGAGTGACGAACAGCAGTCGagCAACTTCCTTGGAACCAGCCGCTTCTCCGTGGCCGATCTCCTCCATTCCAAAGACCAGCAGCTTTCTCTCAGCCTGAGGACAGCAGATGATTCTGTCACAGTGGGCACAGTTCTGGTGAGCCGGATGAAGATGGGGGAGATTGAGGATGGAGAGGTGGATCACATTACAGCCGACATGCACCAGAAGGTGAGATGTGTTGAAGAGTCGTCACATGGCATTAATGATAAAGAGAACGGACCAATAATGAACACTGTGTTTCAGAATGCAGTGTGCAAGGTCTACCGGTTTCAGACGGTGGACAGTAAATGGATGCTGGTGCGGGAACAGATGGCGGAGTGTACACTGTCCTTCAGCATCCCGAAGCAGCTCATTGGCCTCTGCATTCAGGAGGACACCTGCAGGATACAGGAGCTGAAGGATCTGGGAGAGCTTTCACCACACTGGCACAACCTGCGGAAAGACGTGATCTCTCGCTACGAACAGATCATCAAGGAGTACCAGGACACGCTGGTGGAGCTGGAGAAACTCACAGGCCCGTCGTTCAAGCCCAGCTGCAGCAAAGGCCAGAAGTATCTGGAGTTCATTCCCATCAACCTGCACACGCAGAGGATGAGGGTCACGTGTCCCAGGAAAACAGATTCCTGCTATGATGTGGTCACAGTAGGAGCTCCGGCAGCCCATTCGCAAGGCTTCAAGAACGGGGGATTGCAGAAACTGCTCAGCAAATATGAGTCTGAGAAGAAGAGctACAGCACAGCATATCAGTGCATCTACTATCCTCCAGAGCAGACGACCAAAGCCAGAGAGATCCTGAGTGTGGTTTCTCAGCTGCAGCCGCACATCACTGCATTGGCCGATCAGCTGCTGCAGAGCCCCAGAGACGCTCTCAGAGACACACTTAAGAGCCTGGAGGACAAGaCGGAGCAGTTTGTTCATGCTCTGAAGGATGAGCTGGTGAAGAGCGCCCTCCTAGCGCTACATGCTGCCCGTCCCGGATATGTCAGCAAAAGTCAGACTTCTGCACCGTCCAGCCCACCGGAGCCGAATGAGGAGCCTAATGTGGTCTGCAATAATGTGAACAGCTCTCAAACACCGCTGAAAGAGAGCAAAGCGTCTCCTGTCCGCTCAGACTCCATCCCGCACCATAAAGAGTACGATGAGGAGGAATGGGACAGGGTCTGGGCCAGTGTGGCGAAGAGCTTGAACTCTGTCATTGCCATGGTGGAGAAACTACAGGAGCAGGACAACAACAACCAGGAGTCAACACCCTGTCAAACACTCGCAGACGTCATCACCTCACACAATCGCCCCATGGATGTGGTGGACTGGCGGGATCAGCTTGGGGTCCTGGTGCAATCGCTGAAGGAGTGTGTGCTGGATGTGGCAGAGAGAGCCAGACACTCCGTCATCTTTGTGCTGCTCCAGGAGGCGGCGTGCAGCACGGCACAGGGTCTGCAGCTCCAGCAGAGACGAGACACCGTTTTCAGCCAAGCTctgACGGCGCTGGCGTGTGGATTCGTCATGCGGTTGTACGCTGGTTTAGAGGATAAAGGTTTTCTCAGACAGCTGCATGCAGTCGGCCTGGTGGCTCAGTTTGAGAGTCTCCTCAGCACGTACAgtgAAGAGATTGGCATGCTGGAGGACATGGAGGTGGGCATCTCAGATCTGACCAGAGTGACGTTCAGGATCACAGAGGCGCTTTCTGAGGATTCAGCCAGTCTGACGCCCATCATCAGCGGTAGacgAGACCGTTACACTGTGGAGGTGCCTCTGCCACATGATGCCTTCCAGACGCTGCCGGATGAGCTGCGCCAGGGCAAGCTGCTACACGTCATCCCTGTGCTCTTCAATGTGGGCATCAACGAACAACAGACCATCGCTGAGAGGTTTGGTGACATTTCTTTACAGGAGAGAATAAACCAGAAAAACTTTGAGATTCTAGAAGGTTACTATAAATCGCTGAGCAACACGCTGCCGTCGGAATGTCTGCCGAGTTTTCAGACGCAGACGGACATTAAGGAGCTGCTGGAAACGCTCGGACAGAATGTAGTGACCAAGAAGAGGAAGAACGTGGAGATATTGTGGCTTGCAGGAACGATCTGTCGACGGATGAATGGTATCCGCTTCACCAGCTGTAAAAGTGCCAAAGACCGGACGTCAATGTCGGTGACGCTGGAGCAGTGCTGTCTGCTGCGGGACGAGCATCAGCTCAATAAAGACTACTTTGTGCGCGCTTTGGACTGCATGAGGAGAGAAGGCTGCCGGATTGAGAATGTGCAAAAGAATATAAAGTGCAGGAAATACGCCTTCAACATGCTGCAGCTGATGGCTTTTCCCAAATACTACCGGCCGCCTGATGGGACATACGGGAAGGTGGACTCATGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0016316 phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-97 Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human INPP4B (inositol polyphosphate-4-phosphatase type II B).

Ensembl:

ensembl_id ENSDART00000108492

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002876 lncRNA upstream 145580 52807632 ~ 52807843 (+) True XLOC_000681
TCONS_00001143 lncRNA upstream 387473 52563268 ~ 52565950 (+) False XLOC_000675
TCONS_00001139 lncRNA upstream 442667 52495043 ~ 52510756 (+) False XLOC_000673
TCONS_00001140 lncRNA upstream 448254 52500945 ~ 52505169 (+) True XLOC_000673
TCONS_00001136 lncRNA upstream 553740 52398742 ~ 52399683 (+) True XLOC_000670
TCONS_00002877 lncRNA downstream 41512 53266400 ~ 53278288 (+) True XLOC_000684
TCONS_00002878 lncRNA downstream 95271 53320159 ~ 53320674 (+) True XLOC_000686
TCONS_00002879 lncRNA downstream 96043 53320931 ~ 53321338 (+) True XLOC_000687
TCONS_00001162 lncRNA downstream 149605 53374493 ~ 53378079 (+) False XLOC_000690
TCONS_00001164 lncRNA downstream 155104 53379992 ~ 53385083 (+) False XLOC_000690
TCONS_00001151 mRNA upstream 132469 52792439 ~ 52820954 (+) True XLOC_000680
TCONS_00001150 mRNA upstream 189976 52754085 ~ 52763447 (+) True XLOC_000679
TCONS_00001149 mRNA upstream 217298 52735484 ~ 52736125 (+) True XLOC_000678
TCONS_00001147 mRNA upstream 254360 52662203 ~ 52699063 (+) False XLOC_000677
TCONS_00001158 mRNA downstream 54973 53279861 ~ 53299024 (+) True XLOC_000685
TCONS_00001159 mRNA downstream 96990 53321878 ~ 53361108 (+) True XLOC_000688
TCONS_00001161 mRNA downstream 149566 53374454 ~ 53388914 (+) False XLOC_000690
TCONS_00001163 mRNA downstream 152544 53377432 ~ 53387439 (+) False XLOC_000690
TCONS_00001167 mRNA downstream 290201 53515089 ~ 53535565 (+) True XLOC_000693
TCONS_00001126 other upstream 817921 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 1269805 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 1487841 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 1880316 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 2098945 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001160 other downstream 139622 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 162877 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 828216 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001186 other downstream 961151 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001221 other downstream 1903577 55128465 ~ 55128579 (+) True XLOC_000733

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000302_00443369_00533396.mRNA False 2541 mRNA 0.51 15 CI01000302 442699 ~ 533437 (+)