RNA id: TU97223


Basic Information

Item Value
RNA id TU97223
length 391
lncRNA type intronic
GC content 0.27
exon number 1
gene id G85430
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11082648 ~ 11083038 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAACATGCAATCAAACCAGTTGCGGTTTGACGTGGCTGAGAACGCTTATTCAGATCATTCAAAGCAAAACAGATATTTATTCTGATTTCAGAGTTCAACAACATAAATTCTTTTTTTTTTTTTTTTTCCCCAGAGAAAGATGCAGCTGTTATCTAAACATTTTATTTGTGTATTTAAACTTTTTAAATAGTCTATGTTAGCTTAACTGATTCTTATTCTCACACTATAATTTTAAAATTCGGTCAGAGCTTTTTGGATTCATCCCACTTTATTTTCCAAATTTGTTTGAGATAAAATTATATTACATATTAATAAATTGTATTTATAAAATAATTTTATTTACAAGGGTCATGTTTGTGATTTTCATTTGTCATTTAGCCTATAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97222 lncRNA downstream 2055 11080333 ~ 11080593 (-) True G85429
TU97198 lncRNA downstream 39857 11042417 ~ 11042791 (-) True G85406
TU97196 lncRNA downstream 42332 11040064 ~ 11040316 (-) True G85404
TU97195 lncRNA downstream 44273 11038133 ~ 11038375 (-) True G85403
TU97194 lncRNA downstream 45414 11036996 ~ 11037234 (-) True G85402
TU97224 lncRNA upstream 2463 11085501 ~ 11085911 (-) True G85431
TU97226 lncRNA upstream 5061 11088099 ~ 11088390 (-) True G85433
TU97227 lncRNA upstream 5742 11088780 ~ 11089111 (-) True G85434
TU97228 lncRNA upstream 6452 11089490 ~ 11089720 (-) True G85435
TU97230 lncRNA upstream 14422 11097460 ~ 11097776 (-) True G85437
CI01000013_10892125_10899628.mRNA mRNA downstream 183020 10891714 ~ 10899628 (-) True CI01000013_10892125_10899628
CI01000013_10843295_10852581.mRNA mRNA downstream 230067 10843160 ~ 10852581 (-) True CI01000013_10843295_10852581
CI01000013_10838711_10841053.mRNA mRNA downstream 241084 10838497 ~ 10841564 (-) True CI01000013_10838711_10841053
CI01000013_10828622_10836409.mRNA mRNA downstream 245502 10828531 ~ 10837146 (-) True CI01000013_10828622_10836409
CI01000013_10799938_10806858.mRNA mRNA downstream 275790 10798598 ~ 10806858 (-) True CI01000013_10799938_10806858
CI01000013_11262983_11266454.mRNA mRNA upstream 179437 11262475 ~ 11266454 (-) True CI01000013_11262983_11266454
CI01000013_11276658_11278225.mRNA mRNA upstream 193596 11276634 ~ 11278730 (-) True CI01000013_11276658_11278225
CI01000013_11280259_11284882.mRNA mRNA upstream 197146 11280184 ~ 11284882 (-) True CI01000013_11280259_11284882
CI01000013_11308893_11311699.mRNA mRNA upstream 224757 11307795 ~ 11311699 (-) True CI01000013_11308893_11311699
CI01000013_11343431_11351259.mRNA mRNA upstream 259535 11342573 ~ 11351811 (-) True CI01000013_11343431_11351259
TU97193 other downstream 47182 11035032 ~ 11035466 (-) True G85401
TU96958 other downstream 487311 10592204 ~ 10595337 (-) True G85188
TU96941 other downstream 510208 10572377 ~ 10572440 (-) True G85180
TU96930 other downstream 601948 10479861 ~ 10480700 (-) True G85170
TU95233 other downstream 1759804 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU97461 other upstream 516022 11600778 ~ 11600941 (-) True G85628

Expression Profile