RNA id: TU101139


Basic Information

Item Value
RNA id TU101139
length 415
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G88833
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3287630 ~ 3302326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCTGCCGCGCAGTGTCACGCTGCCGTCACTGTCGCCCTGACCGCATGTCTCGTTCACTCTCTCTGGCTCCAGTCCTCAGCTTTTTCTTCCTCTGGCCAGGGCCGGCGTCACCCGTTCGTCTCCAGCCTCCTTAAGTTTGCCATGTGCGCTGACCCACTCCTGACCCCCAGTCATGATACAAACTACTCCAAGGTCAGAGGGACAAGAAAAGGTTTCCTTAAGCTCTGGAGACCCAGAGGGAGAAGATGGAGATCATCACCTCGTTGGCAACCTGAGACAGAACAGAAGAACCACCCAGCCTCAGGAGACTAAAGTGCAAACTAGTCTACAAACCCTGCCAAATGCTGCGATTACATGAAAAGTCACAATAAATTATAAAATAAATGAAAGACTTCCTATTCTTCTGAGCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101082 lncRNA upstream 34478 3252900 ~ 3253152 (+) True G88783
TU101074 lncRNA upstream 55224 3231932 ~ 3232406 (+) True G88775
TU101068 lncRNA upstream 68450 3218846 ~ 3219180 (+) True G88769
TU101067 lncRNA upstream 69608 3217774 ~ 3218022 (+) True G88768
TU101048 lncRNA upstream 99367 3188030 ~ 3188263 (+) True G88749
TU101166 lncRNA downstream 37521 3339847 ~ 3341600 (+) True G88860
TU101173 lncRNA downstream 147298 3449624 ~ 3449940 (+) True G88866
TU101181 lncRNA downstream 161121 3463447 ~ 3463701 (+) False CI01000015_03464878_03470145
TU101182 lncRNA downstream 161451 3463777 ~ 3464033 (+) True CI01000015_03464878_03470145
TU101132 lncRNA downstream 164581 3466907 ~ 3467408 (+) True G88826
CI01000015_03146304_03147242.mRNA mRNA upstream 139891 3143611 ~ 3147739 (+) True CI01000015_03146304_03147242
CI01000015_03042640_03045708.mRNA mRNA upstream 241756 3041613 ~ 3045874 (+) True CI01000015_03042640_03045708
CI01000015_03011472_03026518.mRNA mRNA upstream 260994 3011472 ~ 3026636 (+) False CI01000015_03011472_03026518
CI01000015_02969241_02987416.mRNA mRNA upstream 299935 2969241 ~ 2987695 (+) True CI01000015_02969241_02987416
CI01000015_02905712_02913298.mRNA mRNA upstream 374040 2905437 ~ 2913590 (+) True CI01000015_02905712_02913298
CI01000015_03373445_03409681.mRNA mRNA downstream 71119 3373445 ~ 3410965 (+) True CI01000015_03373445_03409681
CI01000015_03452576_03457978.mRNA mRNA downstream 149330 3451656 ~ 3458031 (+) True CI01000015_03452576_03457978
CI01000015_03460997_03462972.mRNA mRNA downstream 158671 3460997 ~ 3462998 (+) True CI01000015_03460997_03462972
CI01000015_03464878_03470145.mRNA mRNA downstream 160811 3463137 ~ 3470675 (+) False CI01000015_03464878_03470145
CI01000015_03482829_03494230.mRNA mRNA downstream 180503 3482829 ~ 3494230 (+) True CI01000015_03482829_03494230
TU100954 other upstream 257340 3026680 ~ 3030290 (+) False G88670
TU100955 other upstream 257340 3026680 ~ 3030290 (+) True G88670
TU100556 other upstream 771201 2512970 ~ 2513011 (+) True G88328
TU100381 other upstream 787036 2384016 ~ 2500594 (+) False G88172
TU100157 other upstream 1411036 1876004 ~ 1876594 (+) True G87972
TU102216 other downstream 989520 4291846 ~ 4314351 (+) True G89822
TU103067 other downstream 1911970 5214296 ~ 5216731 (+) False G90622
TU103058 other downstream 1914078 5216404 ~ 5263807 (+) False G90622
TU103147 other downstream 2106040 5408366 ~ 5408440 (+) True G90687
TU103259 other downstream 2601768 5904094 ~ 5906150 (+) False G90777

Expression Profile