RNA id: TU116656


Basic Information

Item Value
RNA id TU116656
length 370
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G102527
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 558953 ~ 559322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGGCTTCGTAAGAAGCATTTCAAGGTCCTGGAGTGGCCTAGCCAGTCTCCAGATCTCAACCCCATAGAAAATCTTTGGAGGGAGTTGAAAATCCGTGTTGCCCAGCGACAGCCCCAAAACATCACTGCTCTAGAGGAGATCTGCATGGAGGAATGGGCCAAACTACCAGCAACAGTGTGTAAAAACCTTGTGGAGACTTACAGAAAACGTTTGACTTCTGTCATTGCCAACTAAGGGTATATAACAAAGTATTGAGATGAACTTTTGTTATTGACCAAATACTTATTTTCCATTATAATTTGCAAATGAATTCTTTAAAAATCAGACAATGTGATTTTCAGGATTTTTTTTTTCTCATTTTGTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116403 lncRNA upstream 57022 501677 ~ 501931 (+) True G102305
TU116396 lncRNA upstream 63864 494877 ~ 495089 (+) True G102298
TU116219 lncRNA upstream 362631 182265 ~ 196322 (+) True G102139
TU116220 lncRNA upstream 365962 187962 ~ 192991 (+) True G102140
TU116211 lncRNA upstream 385051 143965 ~ 173902 (+) True G102131
TU116673 lncRNA downstream 15762 575084 ~ 575305 (+) True G102544
TU116769 lncRNA downstream 217253 776575 ~ 778299 (+) True G102630
TU116814 lncRNA downstream 227675 786997 ~ 787232 (+) True G102675
TU116838 lncRNA downstream 389973 949295 ~ 949519 (+) True G102697
TU116852 lncRNA downstream 455024 1014346 ~ 1014776 (+) True G102711
CI01000018_00550871_00552683.mRNA mRNA upstream 5487 550801 ~ 553466 (+) True CI01000018_00550871_00552683
CI01000018_00509000_00541125.mRNA mRNA upstream 17661 508944 ~ 541292 (+) True CI01000018_00509000_00541125
CI01000018_00493207_00493553.mRNA mRNA upstream 65249 493207 ~ 493704 (+) True CI01000018_00493207_00493553
CI01000018_00312158_00314088.mRNA mRNA upstream 244064 311176 ~ 314889 (+) True CI01000018_00312158_00314088
CI01000018_00296756_00298858.mRNA mRNA upstream 259837 296682 ~ 299116 (+) True CI01000018_00296756_00298858
CI01000018_00641198_00648887.mRNA mRNA downstream 81876 641198 ~ 649104 (+) True CI01000018_00641198_00648887
CI01000018_00653069_00678015.mRNA mRNA downstream 93747 653069 ~ 678015 (+) True CI01000018_00653069_00678015
CI01000018_00791508_00801917.mRNA mRNA downstream 232061 791383 ~ 802946 (+) True CI01000018_00791508_00801917
CI01000018_00857807_00915417.mRNA mRNA downstream 298485 857807 ~ 916053 (+) True CI01000018_00857807_00915417
CI01000018_00924089_00929734.mRNA mRNA downstream 364767 924089 ~ 929903 (+) True CI01000018_00924089_00929734
TU117055 other downstream 1023591 1582913 ~ 1585662 (+) True G102895
TU117572 other downstream 1409930 1969252 ~ 1985311 (+) True CI01000018_01924489_01985310
TU118573 other downstream 3131767 3691089 ~ 3691519 (+) True G104258
TU118875 other downstream 3810864 4370186 ~ 4373412 (+) True CI01000018_04368179_04375192
TU118997 other downstream 4196479 4755801 ~ 4759768 (+) True G104670

Expression Profile