RNA id: TU116852



Basic Information


Item Value
RNA id TU116852
length 431
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G102711
representative True

Chromosome Information


Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1014346 ~ 1014776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGGCGGCCAAGGCCCATTGATGCACGTGGGGAGCAAAGGCTGGCCCGTGTGGTCCGATCCAACAGATGTGCTACTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGGTGTCAGAATACACAGTGAATCACAGTTTGTTGCATATGGAGCTGCATAGCCGCAGACCAGTCAGGGTGCTCATGCTGACCCCTGTCCACCGCTGAAAGCGCCAACAGTGGGCATGTGAGCATCAGAACTGGACCACGGAGCAATGGAAGAAGGTGGCCTGGTCTGATGAATCACGTTTTCTTTTACATCACGTGGATGGCCGGGTGCATGTGCGTCGCTTACCTGGGGAACACATGGCACCAGGATGCACTATGGGAAGAAGGCAAGCCGACGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGTTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116838 lncRNA upstream 64827 949295 ~ 949519 (+) True G102697
TU116814 lncRNA upstream 227114 786997 ~ 787232 (+) True G102675
TU116769 lncRNA upstream 236047 776575 ~ 778299 (+) True G102630
TU116673 lncRNA upstream 439041 575084 ~ 575305 (+) True G102544
TU116656 lncRNA upstream 455024 558953 ~ 559322 (+) True G102527
TU116865 lncRNA downstream 45393 1060169 ~ 1061013 (+) True G102719
TU116870 lncRNA downstream 57527 1072303 ~ 1072561 (+) True G102724
TU116877 lncRNA downstream 65248 1080024 ~ 1159297 (+) True G102729
TU116899 lncRNA downstream 162150 1176926 ~ 1177242 (+) True G102748
TU116897 lncRNA downstream 162636 1177412 ~ 1177716 (+) True G102746
CI01000018_01005482_01007949.mRNA mRNA upstream 6191 1005043 ~ 1008155 (+) True CI01000018_01005482_01007949
CI01000018_00968089_00972654.mRNA mRNA upstream 41624 967951 ~ 972722 (+) True CI01000018_00968089_00972654
CI01000018_00924089_00929734.mRNA mRNA upstream 84443 924089 ~ 929903 (+) True CI01000018_00924089_00929734
CI01000018_00857807_00915417.mRNA mRNA upstream 98293 857807 ~ 916053 (+) True CI01000018_00857807_00915417
CI01000018_00791508_00801917.mRNA mRNA upstream 211400 791383 ~ 802946 (+) True CI01000018_00791508_00801917
CI01000018_01077933_01082094.mRNA mRNA downstream 63157 1077933 ~ 1082554 (+) True CI01000018_01077933_01082094
CI01000018_01117105_01119896.mRNA mRNA downstream 101981 1116757 ~ 1120144 (+) True CI01000018_01117105_01119896
CI01000018_01130413_01157978.mRNA mRNA downstream 115010 1129786 ~ 1157999 (+) True CI01000018_01130413_01157978
CI01000018_01162096_01176494.mRNA mRNA downstream 147320 1162096 ~ 1176740 (+) True CI01000018_01162096_01176494
CI01000018_01237799_01262508.mRNA mRNA downstream 223023 1237799 ~ 1262508 (+) True CI01000018_01237799_01262508
TU117055 other downstream 568137 1582913 ~ 1585662 (+) True G102895
TU117572 other downstream 954476 1969252 ~ 1985311 (+) True CI01000018_01924489_01985310
TU118573 other downstream 2676313 3691089 ~ 3691519 (+) True G104258
TU118875 other downstream 3355410 4370186 ~ 4373412 (+) True CI01000018_04368179_04375192
TU118997 other downstream 3741025 4755801 ~ 4759768 (+) True G104670

Expression Profile