RNA id: TU116877


Basic Information

Item Value
RNA id TU116877
length 387
lncRNA type read_through
GC content 0.36
exon number 3
gene id G102729
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1080024 ~ 1159297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGTGATGGGCGATTTCAAAACACTGCTTCATGAAGCTTTAAGAATCTTTTGTTTCGAATCAGTGGTTCGGATTGTGTAAATGAAGACTTTTTTACTGAAATCACATGACTCTGGTGCTCTGAACCACTGATTCGAAACAAAAGCTTCGAAGCTTTATGAAGATATTGTTGAAAAGTCATTATTTTGGCGCACAAAAACTATTCTCGTCACTTTATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTTAGTACCTTTCTGGATCTTGAGAGGTTCAGTGACATTGCTGGCAATAGAGGCCTCACTGAGCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116870 lncRNA upstream 7463 1072303 ~ 1072561 (+) True G102724
TU116865 lncRNA upstream 19011 1060169 ~ 1061013 (+) True G102719
TU116852 lncRNA upstream 65248 1014346 ~ 1014776 (+) True G102711
TU116838 lncRNA upstream 130505 949295 ~ 949519 (+) True G102697
TU116814 lncRNA upstream 292792 786997 ~ 787232 (+) True G102675
TU116899 lncRNA downstream 17629 1176926 ~ 1177242 (+) True G102748
TU116897 lncRNA downstream 18115 1177412 ~ 1177716 (+) True G102746
TU116895 lncRNA downstream 18509 1177806 ~ 1178439 (+) True G102745
TU116917 lncRNA downstream 36453 1195750 ~ 1196065 (+) True G102766
TU116924 lncRNA downstream 124754 1284051 ~ 1284200 (+) True G102772
CI01000018_01005482_01007949.mRNA mRNA upstream 71869 1005043 ~ 1008155 (+) True CI01000018_01005482_01007949
CI01000018_00968089_00972654.mRNA mRNA upstream 107302 967951 ~ 972722 (+) True CI01000018_00968089_00972654
CI01000018_00924089_00929734.mRNA mRNA upstream 150121 924089 ~ 929903 (+) True CI01000018_00924089_00929734
CI01000018_00857807_00915417.mRNA mRNA upstream 163971 857807 ~ 916053 (+) True CI01000018_00857807_00915417
CI01000018_00791508_00801917.mRNA mRNA upstream 277078 791383 ~ 802946 (+) True CI01000018_00791508_00801917
CI01000018_01162096_01176494.mRNA mRNA downstream 2799 1162096 ~ 1176740 (+) True CI01000018_01162096_01176494
CI01000018_01237799_01262508.mRNA mRNA downstream 78502 1237799 ~ 1262508 (+) True CI01000018_01237799_01262508
CI01000018_01378078_01379655.mRNA mRNA downstream 218270 1377567 ~ 1379678 (+) True CI01000018_01378078_01379655
CI01000018_01588236_01598892.mRNA mRNA downstream 428736 1588033 ~ 1599250 (+) True CI01000018_01588236_01598892
CI01000018_01709643_01800520.mRNA mRNA downstream 550346 1709643 ~ 1800520 (+) True CI01000018_01709643_01800520
TU117055 other downstream 423616 1582913 ~ 1585662 (+) True G102895
TU117572 other downstream 809955 1969252 ~ 1985311 (+) True CI01000018_01924489_01985310
TU118573 other downstream 2531792 3691089 ~ 3691519 (+) True G104258
TU118875 other downstream 3210889 4370186 ~ 4373412 (+) True CI01000018_04368179_04375192
TU118997 other downstream 3596504 4755801 ~ 4759768 (+) True G104670

Expression Profile