RNA id: TU121114


Basic Information

Item Value
RNA id TU121114
length 2914
RNA type TUCP
GC content 0.48
exon number 2
gene id G106538
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6530447 ~ 6533512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAACTCTTGATACATATGGGCTTCTCTATATCTTTCACTCCTTTATTCATTGAGCAGTGAGCAGGCAAAAAAACAGACCTGTGTGTAGAGTGATGTCATGCTACATTCAGAAATATCCGCTCAGTATGTCCAGGTTAGCAAGAGTAGTACAAATCACTGTGAAAAGAGGAGGATACTCATGATCCGGAGATTTATTTTTTGCAAGTCGTGTTTTCCAAAAGACAAAACAAGCAGTGCACACATATCCACAGTGAGGTCACAGGGAGGTCCTTGTCCAATATAAAAGAGTTACAAAAGTGGAGATTCAGTAAAAAGAACGATTTTCTTTTCATCAATATCAATAGGAAGTCACGTTGTGTGATACGAAAGTGTGTCTCGAACAAAAGGCTGTGTTCCCTGATCCAGTTTGAGTGTACAAGACTCCATGCAGCTTTATTTAGGAGTGTCAGAAGTGCTTGGTTTCATCTCACACAGTTCTAAAATTCATTATATGTAAAATACTGGAGAGATGAAGATCGCAGCTGCGTTTTACACAGTGCTTATGGGATGACAAAGCAAGAAATTACCACAGTTTCACATATTCCATTGGAAGGGAATGAGAAGCTTTTTGATATTAAACATTCTTCTTAGGATCAGCATTCTCACCATATTATTCCTCTTTGAAAGGCTGGTAAGGTAAATAAACCCTCAAGCTTACATTATTATGAATGTCATGTGTTACATATTGCAGTGCATTCTACAAAACTCTTAATTATATTAGGGTGTAATATGCAACATCACAATTCATTTCAAAGATGTAAAAACAGTTAAGATATAGTCCTCAGTAGACAGGTGAAATCAAAAAAGTGGAGGTTGATTGCTTCATATCAAAAAACATTGTTTTGGCCTAAAGCTCTTGTGATAGATTTCTATTGTCAGAAACATCTGATGGGCCTCCAAGCTTTCTACTTCCTGCTTTGTGAGGTGGGGGTGCTTTTGTTGCCGGAACGACGGACGGGAACCTTCGAGACAGGGATTCGAGTGCGTGGTGGGGCATCAGTCTTTTTAGGAGGAGTGGTTGAAGTGGGGCTAAGATTAGAAGACAGCGCTCCTTGGCTGGAAGAGTGGGATGGTGGTGTTTGCCTCACACTAATGGGGATCTTGGAATCTCGAGGCAGGCTGGTGCTGCCTTTCATGGATCGGAATGAGGAAGTGATGGAAGACGAGCATTTCGGAGAAGGTAAGTTCATTTTTAGGTCACCTGCAGATTTTGTTGGTGAACTCACGTCATCGTCTGAGCCAGCAGCACTAGGGCTGTCGGGGTCATAGAGGTCGTAGAGCGCATCACCAGAGCAGCTATCCTTCAGCAGGCCGTCCCGACGGAGGAAGGTGCTGTCCTCATCCTCTGGGCCAGGTGTGGGAGAGTCCCAGTAGCCTTCATCACTTGGTGGGGCATCATGGAGTTCTTTATCAACAGGAGGAGTCTTCAACCTTCTGGGGCAACATATGCCATAGACCCTGCATGTCAGCATCATCAACACCCTCAGGACTAGCCATCTCCTCCCCTCCACCCATGTAAGCAACAACTCCACTACCCTGTGGCTTTTTGGGGGCTGCACGTGGTCTTTGGTGGGCTGGAATGTAGCAAGAAGCATGGATAGATGTAAGACTACTGACCTGGGGAGGAAGTGGAGGCTTGGCAGGAGAGCATCTCTCAGAGTTCGTCCCGGCTCCACTTAATCTGCGACCCATGCAGCCCCCGCTACTGCTACCAGTTCCACTGCTCGTGGCACTTCCCCCATTCCCAGAATCCTCTTCTGGGTCAGCGATGATGTCACCACAGCCTGTTAAAGAATCAAAGCTTTTTAGTGAAGTAACATCAGTGAACATGGAGCATAAGCGATCCACAGATTGCTCGGATTGTGGGTCAGCTGTGCTGTGCTCCATTGGAGGGGTCAAAGCACAGGTCGGAATGGAGGACAAAAGTTCTGAACCGTTGTTTTTATCATGTTGGAGCCCTCCTGTCTGGACTCGGACTGGAGAAGGAGCAGGAGACTCTTCAGTGACTGTATGTTGTTGGGAAAGAGAAGGACCAGAGTAATCACACTCCACTTCATTAGTACCCTGAAATTCTTGCATAGATGTTGCCTTCCATTTCTCAGCATCCCCTGGGAGAGGAGTCTTCTCAAACACTTGTGGCAGGGGCTCAAGAGTCAGTGTCATGTCCTTCTCTGTTTCCACACTGCCAGAGCTAGGGGAAAGTATTAGTTCTCCCTCCTTCACCTCTTTGGCTACCTCCACAGAGTCCTCTTGAACCTGGGGCTTCCGCCGCCAACGCATGCTGCTGAACAGCCCCTTAAGTCCTCGTCCTCGTCGTCCCACCGTAGTAGTTCCATCCCCTGCACGGCTGCTGCTCCGGCGCAGTAAAGAGAAGAAGCTGAAAGACTTGGTGATGGAGCTGCGGAGGGGGGCGTTGGATACACCATCTGGTGTGCCGGCGTGGAGCTGGTCACTACTGGCAGATTCCTCTTTCCGGTGGCCGTCAAGCTCCGAAGGAGTGTCCGTTATTAAGCCATCATGGGTTTTGCTCCTAACGAGCTCTAGCGTCTTGCCAGCGGCTTTACCGGTGGACTCCCCTTTGTTCCTGACAGAGAAAATACTCGGCATGCTGCTGCCGGACTTGCGCTTGCTGAACAGCTTGAAGGCGGCTTTGTTGAGCTTTCCTGGTGGCTGTGGGTCACATGGAGGCGGTTCACTGCATTCGTTTTGAACCTCCATCTCTGCCACTATGTCTACTGCACCCTCTGTTTTCTTTCTTTCTTCTTCTGCCTTTATTTTACCTTGTCTCTAACTGCTTCTTTCCTTTTCCTCTCCCTTTCCACTTCTATCCGCTGCCTTTGCTTGTTGGTGTTCTCCCCGCCTCGCTCTCTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121068 lncRNA downstream 38684 6491240 ~ 6491763 (-) True G106495
TU121045 lncRNA downstream 56022 6471528 ~ 6474425 (-) True G106484
TU121071 lncRNA downstream 146958 6380753 ~ 6383489 (-) True G106498
TU121030 lncRNA downstream 261743 6268467 ~ 6268704 (-) True G106479
TU121028 lncRNA downstream 277401 6252799 ~ 6253046 (-) True G106477
TU121115 lncRNA upstream 2831 6536343 ~ 6536648 (-) True G106539
TU121117 lncRNA upstream 4371 6537883 ~ 6538167 (-) True G106541
TU121119 lncRNA upstream 6924 6540436 ~ 6540674 (-) True G106543
TU121046 lncRNA upstream 12337 6545849 ~ 6547225 (-) True CI01000018_06547019_06585316
TU121168 lncRNA upstream 174272 6707784 ~ 6707988 (-) True G106579
CI01000018_06503908_06515370.mRNA mRNA downstream 15077 6503782 ~ 6515370 (-) True CI01000018_06503908_06515370
CI01000018_06493607_06502730.mRNA mRNA downstream 27717 6493345 ~ 6502730 (-) True CI01000018_06493607_06502730
CI01000018_06484577_06490112.mRNA mRNA downstream 40335 6484577 ~ 6490112 (-) True CI01000018_06484577_06490112
CI01000018_06475800_06482278.mRNA mRNA downstream 48156 6475309 ~ 6482291 (-) True CI01000018_06475800_06482278
CI01000018_06425724_06426234.mRNA mRNA downstream 104213 6425346 ~ 6426234 (-) True CI01000018_06425724_06426234
CI01000018_06547019_06585316.mRNA mRNA upstream 12874 6546386 ~ 6585316 (-) False CI01000018_06547019_06585316
CI01000018_06598234_06605351.mRNA mRNA upstream 64469 6597981 ~ 6605934 (-) True CI01000018_06598234_06605351
CI01000018_06639339_06649926.mRNA mRNA upstream 105695 6639207 ~ 6649971 (-) False CI01000018_06639339_06649926
CI01000018_06665847_06684600.mRNA mRNA upstream 132275 6665787 ~ 6684600 (-) True CI01000018_06665847_06684600
CI01000018_06696391_06705674.mRNA mRNA upstream 162246 6695758 ~ 6705674 (-) True CI01000018_06696391_06705674
TU120472 other downstream 504571 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 504571 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1654608 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 2284437 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 2512630 4007697 ~ 4017817 (-) False G105104
TU121056 other upstream 107100 6641872 ~ 6641956 (-) True G106487

Expression Profile