RNA id: CI01000026_03309007_03342583.mRNA


Basic Information

Item Value
RNA id CI01000026_03309007_03342583.mRNA
length 2257
RNA type mRNA
GC content 0.44
exon number 11
gene id CI01000026_03309007_03342583
representative False

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 3308515 ~ 3342851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCATTAATATCCAAACAGTAAGAGCCCCTGCATCAATATATCAGTATGAAGCCCTGGGAAGGAGGGCAGGAGCACAACCCTCAGCATATTCATCCTCTCACTTTCTCATGCGCACATGCTCATACAAAGCACAAGCTAAACAAGGTCTGTCAAACTTGGTAATTACACATTCATCACCTCCGAGATGTGGCGGGGTGATTGGATGCCTTCAGCAAAGAAGCAAGCTTGTCACTCCGGTATTAACAGTTTCATTAGAACACAGTGATTATGCTAAATGAATCAACGCTAGGGCTCGACACCTTGGCCGTGAAACTGAGGAAATACTTAATGCGGCTCCTGATGCGCCGAGACGATGGAGGGTGGGTTCGGGGGGTGAAAATACAAGATCTCGCAGCCATCCTCCATTTGATCGTCTTAAAGGAAATCGGCGAAAATTCCACAGAGGACTCAGATTCACAATTCGGTGACAAAGATGTAATGATACAGAAAATTATCTTCAACAAGTATCGTAAAGGTCAGGGTAATTATATGCCAGATAGAAAAACAAGCCTGACCCTTAGCAATGCATACAATTCCTCATTGATTTTCTACAGACAAAGAGAATTTAATAAATTTAGCTACTGTAACCAGACCAGGTGGTCAATCATTGTCCTATTTTCAAAGCCCTTGATGAGAGATGTGAACTTCCATGGAGAGGCGGCTTTTGATGACAACTACACAACATCCAATAGACTGAAAAATGGTGGAATTAATGGAGATAAACAGAGTGATATCAAGCAAACAAACCAGAGGGAAGTTCAGACTCTGTCTAGAAATGGGAAGTGGGTGGAGCTTCAAAGGAAGGAACGAATGGCTAGGTTAACTGAGGTTAGTCTGGGTGGAGACTATGCGGAAGTGAGCGAGAAGGAGGGCCACGTCCCAAGGCAAATTTGCAGTTCTGAGGACACAACAAGCTTTATTCATGTCAGCAAACAGTGCAGCAATCTCCCAGAGAAATGGGCTTTGTGTCTACAGGGGTCCCAGCAGAGCAGGCTTACAGATCTCTTCAATCTAATGCCTGGAAGTGAAAATGCTAAGAAGCTGCAAGGGCTAGAGCAAAAGAGGTTTGATTTGACAGATGAATACTTGAGCCCTGTCCAGATGGAGGAGGAAGACGACAGGGAGGGAGAGAAATGTGCTATTCTGGAGGACACAATGTCAGTCAGAGAGTCTGAAAGCCATGCGTCCTATGGTAAAAATGACAGGCATGATGGCTTTTCATTGAAATGGTGTAGATATGTATACATGACCCCTCTTTATAAAGAGGTCAGCCATTTACATGCCAGTACTGACAGGCAATTGAAAAATGGTGTCAAACAAACAGCCTTAAAAAAGGTGCGTCTGTTAAGGAATGGTGTAAGTGTCGCTGCGCTGCTTCTGCTCAACGGGGAACACCTCGGAGCACGTAGAGGTGTGAAAGCATCTGGATCTCAAACCCTCGAGCCGCTGGGTGGGGCCCGGACAGACTCCAAATGTAGGCTGATGGAAAAGCCAGATTACTCCTGTCAAAGTGTGGGCAACAATGCCTCCCGGTGCTTTGTTTACCCTGCTTTTCAAAGGCGTTTGTTCTTTGATAAGGCCCCGGAAACGGGCTCGCTGGTGGGAACCCATGGAAAAGAATACACTTTCTATCAATTGTGCCGGTCTTATCCCCCAGAGCGCAGGAACAATGTTCTTCGTCTATCTTTCTCTCTCAGTCAGTTACAAGTAACAATTCAAGCATAGTCCTGCCACGATGATCTTTCAGACTTCTACTGTTTTTACTAATTTCCCCGTCATACACACTGGCACCCGCTCACACACACACACTCTCTATTGACGTGTTTTCGGTCTCTGCGCCACTCTCGGCGTCTGCTCAACGCTCTCTGATATGTGAGTGTGCTGGAGTGGAGAGAGACTGACGGGGCCGCGTGTTTCTCCCCGAAGACTAAAGCTAGAGTTATAATGAAGGGCTCAAAACACCTTCAGGAGCACTATCGAAGAGATGGTCACATGAACAGTGACTGATGATGAATTATAGATTTCAGAAATATCAGAGTGCAGCATTAATAACCAATTCAAACAGATCACAGTGAAAGCCGGTAAAAATTTGAGCGTCACCTTTAAAACTTTTAGTAAGATTTTCACAAACGCGCAAAGATTGTAAATATATCACTATATTGTGGTTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146954 lncRNA downstream 1078 3307073 ~ 3307437 (-) True G129328
TU146953 lncRNA downstream 2086 3306196 ~ 3306429 (-) True G129327
TU146898 lncRNA downstream 34885 3272234 ~ 3273630 (-) True G129273
TU146897 lncRNA downstream 36909 3268309 ~ 3271606 (-) True G129272
TU146824 lncRNA downstream 333241 2975007 ~ 2975274 (-) True G129210
TU146989 lncRNA upstream 92798 3435649 ~ 3438249 (-) False G129358
TU146990 lncRNA upstream 92798 3435649 ~ 3438249 (-) False G129358
TU146991 lncRNA upstream 92798 3435649 ~ 3438249 (-) True G129358
TU147038 lncRNA upstream 152306 3495157 ~ 3500648 (-) False G129399
TU147037 lncRNA upstream 159461 3502312 ~ 3503106 (-) True G129399
CI01000026_03146190_03159300.mRNA mRNA downstream 148775 3145706 ~ 3159740 (-) True CI01000026_03146190_03159300
CI01000026_02939243_02946057.mRNA mRNA downstream 361272 2938778 ~ 2947243 (-) True CI01000026_02939243_02946057
CI01000026_02846742_02867620.mRNA mRNA downstream 440895 2846259 ~ 2867620 (-) True CI01000026_02846742_02867620
CI01000026_02805926_02807292.mRNA mRNA downstream 501017 2805926 ~ 2807498 (-) True CI01000026_02805926_02807292
CI01000026_02653022_02656755.mRNA mRNA downstream 651760 2651645 ~ 2656755 (-) True CI01000026_02653022_02656755
CI01000026_03353132_03359434.mRNA mRNA upstream 9719 3352570 ~ 3359492 (-) True CI01000026_03353132_03359434
CI01000026_03439507_03490314.mRNA mRNA upstream 96656 3439507 ~ 3490314 (-) False CI01000026_03439507_03490314
CI01000026_03620455_03641230.mRNA mRNA upstream 277333 3620184 ~ 3641455 (-) True CI01000026_03620455_03641230
CI01000026_03691072_03696628.mRNA mRNA upstream 347371 3690222 ~ 3698397 (-) True CI01000026_03691072_03696628
CI01000026_03753185_03765875.mRNA mRNA upstream 409730 3752581 ~ 3765875 (-) True CI01000026_03753185_03765875
TU144773 other downstream 1572409 1735777 ~ 1736106 (-) False G127418
TU144310 other downstream 2305926 999847 ~ 1002589 (-) True G127016
TU146987 other upstream 37934 3380785 ~ 3487020 (-) True G129357
TU147118 other upstream 327723 3670574 ~ 3670884 (-) True G129476
TU147383 other upstream 1024445 4367296 ~ 4373069 (-) True G129658
TU147520 other upstream 1470199 4813050 ~ 4819282 (-) False G129750
TU148111 other upstream 2932660 6275511 ~ 6317154 (-) True G130256

Expression Profile