CI01000026_02939243_02946057


Basic Information

Item Value
gene id CI01000026_02939243_02946057
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2938778 ~ 2947243 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_02939243_02946057.mRNA
AGAGTTCTAAAATGGGCGGAGCTTATAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAACTCAGTAGTTATTTATGATACATATTGTCGGGTTTAAATTATTATCCATTATTATTATTAGCCAGAGACACGATAACACACGTTCACGGTGTTCTGTTACATTTTTCAGTGCTCCTCAGGACGGACCAATCACGTTTGTGATGAATGAATAAGGATTTTTTTATACATATTTTAAATGTTCTGAAACTGACGTGTAGCAAACAGTATAATTAAAAACGTTAAGCAAATATAAGCTATAAATAACAAGTATAAGCATAGTACAAATGTTTCAAAAAATAAAAGCTCATGAGATTTGAATGCGACTCAGTTGAGGATTCGCCTTTTTGAGCCGCCATGCGCCCCCTTCAGGAAGTCTGTGTTTGTGTCATAAGACACGATATCACTAAAACCCCAATATGTAAGTCAAGCACTGCGCTTGATCTACGTGGACGAGCTCTCTGTCTCCTCCTGCTGCTGTACTCGTTTAGCTCGCTAGCTGTTCTGAATCCGCCTCTGTAAGTCATCATCATCAGTCCAAGATAGCGGACAGTCAGGAAGCCAGCGGTAATGAAAGGAAGCAGAAAACAGCCGAGATAGCTCGATAGAAACCGATCTGACACCGTAAGTGCCATTATTTAATTGTGAATCGCTCCGGGTACCTTAACCCAAATACAATTCAACTTTTCACTTATAAAATGGACAGCGAGTTTTGCTATAACGTCTGGCATAGACTTTACTGTCAATGGAAAGCTAATGAAATTAGCCTCTATGTGTTTCGAGGTCAGCAACCATTTCAAACCACATCTCTGTATTGCAATAATAGCTTGCCAGCAAAACGTACATATGGAGTGTCACTTAACTGCCTGTTAATGTTTATCCTTAGTAACGGATTTCTTGGAGAGCTGATCTGCCAATCAGTGGCTGTGTTACAACCCTAGTGAGCCGGCTATGTAGACAGATTTTTTTTTTTTTTAATAAAAATTTCGATTCGAACGTTTAGATTTCCAAAAAGGCTAATCGGCTCACTATGGTTTTGCAATACAATCAATATCTAATATGATAGAGCTTTCATCCCCGTCTAATCCATATGTATGCTAATTTTTCCAGATGTCCTGTTTAAAGGGGCTCCTCACCAGCTGCCTTGTACTGGCGAGTGTGATGTCCTGGGCCAAGGCAGTGCCAATAAGTATAGATAAAACTAAGGTGAAGCTCCCAGAAGAAACAGTCAAAGAGCCTCCCCAGAGTGTGCAAGGGAAGTTGGCTAAAGAGCTTGACTTTGTCAGCCACCATGTGAGAACCAAGCTGGATGAACTCAAAAGGCAAGAGGTCAGCCGCCTGAGAACCCTGATCAAAGCCAAGCAGGACATTGAAGGAGGGAATGATATTGCGGTAGATCACCAGGCGTTACTCAAGCAGTTTGAATATCTGAACCACATGAACCCGCACACATTTGAGGTTGAGGATCTGGACAGACTCATCAAATCGGCTACAAAAGATCTGGAGAACTACGACAAGGAGCGGCATGAAGAATTTAAAAGGTACGAGATGATGAAAGAGCATGAGAGACGAGAACACCTGAAGACACTTGATGAGGAGGACAGGAAGAAAGAGGAGGAGCACTATGAGGAGATGAAGAAGAAACATGCTGATCACCCCAAAGTCAACCATCCCGGTAGCAAGGATCAGCTAAAAGAAGTGTGGGAGGAGGCTGATGGCCTTGACCCTGAAGATTTTGACCCCAAAACCTTCTTTAATCTACATGACACAAACGGAGATGGCTTCTTTGATGAACAAGAGCTAGAAGCCCTATTCACGAAAGAGGTTGATACCAATAAAGACAGACTGGTGTCCTTAGATGAGTTCCTGGTTGCCACAAAGAAAAAAGAGTTTCTTGAACCAGACAGCTGGGAAACTTTAGAACAGAACCAGGCATATACTGAAGAAGAGATGAGAGAGTTTGAGGAGCATTTGGTCAGGCAGGAGCAAGACTTAAACCAGAAAGCAGCTGACCTTCAGAAGCAGAGGGAGGATCTAGAGCGACAGCAGGAGCAGCTCAATGCTCAGAAAATAGAACTGCAGCAGGCTGTGGAGCATATGGAACGGTTGAAAACACAGAAGGAACCGTCTCAACCTGAGATGCATTTGGAGGGAAATGCTGTTCCTGAGTCCATAGGACATGACCAACCTCCTGTGCCCCCTGAGCACCAGCCTCTGTCCCCAGGACACCAAGATATCCCTCCAGAACAACAACAACAACATGATGTACCTCAGAATCAACAGGATCTAGGACAGGAACACCAAAATATAGCCCAAGAAAACCAGCCACTGCCACCAGGACACAACAGCCCACCCCAAGATTCTCTAAAGGTTCCCCTTGACCACAACAATGTGCCATAGGACTGTCATATGGTTTTGTGGAGAAACCGACCTAGCACCAGGCTCAGAGACTTCAACAAACAGTACCTCTTGTCCAGTACTAGTCAATGATTACCTGCGTTCGTGTGTGCTACGGTTTTATTTAGTAGGGAAGTGGCTGGTTTCATAAGCATAATACATTTAATGCAGACTTTGCTGTTTGGTATAAGTGTGTTTGATTTCTTTTTGTTATTGAAAATATCTTTTTCATTCGTTGTGGATATTTTATTTTACAACACAGTGGATTGGATGTCTGTGTATACGCTTTTGTTTTGCACATTTATTTTTCTGGAATTTTAATGACCATGAAGAGCTACTTAAAACCTAGTTGTGTGGTATCAGAGTATTGTTGAATTGTACTGGAAGTTTTTAATTGATTAGGGCTACTCTGAATTTTAACTGTTGCTTACAGTGGGAACTTTGAGAGTTAAGTCAGACATCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_02939243_02946057.mRNA True 2941 mRNA 0.42 10 2938778 2947243

Neighbor

gene id symbol gene type direction distance location
CI01000026_02846742_02867620 ALX4A, ALX4B, ALX4 coding downstream 71158 2846259 ~ 2867620 (-)
CI01000026_02805926_02807292 NA coding downstream 131280 2805926 ~ 2807498 (-)
CI01000026_02653022_02656755 PHF23B, PHF23 coding downstream 282023 2651645 ~ 2656755 (-)
CI01000026_02633084_02640164 PLSCR3B, PLSCR3 coding downstream 298614 2632703 ~ 2640164 (-)
CI01000026_02621057_02628547 NA coding downstream 309330 2620206 ~ 2629448 (-)
CI01000026_03146190_03159300 NA coding upstream 198463 3145706 ~ 3159740 (-)
CI01000026_03309007_03342583 NA coding upstream 361272 3308515 ~ 3342851 (-)
CI01000026_03353132_03359434 NA coding upstream 405327 3352570 ~ 3359492 (-)
CI01000026_03439507_03490314 PDE3B coding upstream 492264 3438795 ~ 3490503 (-)
CI01000026_03620455_03641230 NA coding upstream 672941 3620184 ~ 3641455 (-)
G129191 NA non-coding downstream 2475 2929054 ~ 2936303 (-)
G129198 NA non-coding downstream 22832 2915743 ~ 2915946 (-)
G129195 NA non-coding downstream 25898 2912674 ~ 2912880 (-)
G129184 NA non-coding downstream 53304 2885262 ~ 2885474 (-)
G129180 NA non-coding downstream 68108 2870449 ~ 2870670 (-)
G129190 NA non-coding upstream 1653 2948896 ~ 2950353 (-)
G129193 NA non-coding upstream 3484 2950727 ~ 2951513 (-)
G129201 NA non-coding upstream 6355 2953598 ~ 2953884 (-)
G129202 NA non-coding upstream 9285 2956528 ~ 2956861 (-)
G129209 NA non-coding upstream 27328 2974571 ~ 2974791 (-)
G127418 NA other downstream 1202672 1735777 ~ 1736220 (-)
CI01000026_00986386_01002180 NA other downstream 1936189 986182 ~ 1002180 (-)
G129476 NA other upstream 723331 3670574 ~ 3670884 (-)
G129658 NA other upstream 1420053 4367296 ~ 4373069 (-)
G129750 NA other upstream 1865807 4785885 ~ 4820249 (-)
G130256 NA other upstream 3328268 6275511 ~ 6317154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G47840 nucb2,nucb2a,LOC105907222,LOC107750551,LOC107688161,LOC107585938,LOC107754687 non-coding NC_035901.1 CM008304.1 37918016 ~ 37934003 (+)