CI01000026_03309007_03342583


Basic Information

Item Value
gene id CI01000026_03309007_03342583
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 3308515 ~ 3342851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_03309007_03342583.mRNA
ACCATTAATATCCAAACAGTAAGAGCCCCTGCATCAATATATCAGTATGAAGCCCTGGGAAGGAGGGCAGGAGCACAACCCTCAGCATATTCATCCTCTCACTTTCTCATGCGCACATGCTCATACAAAGCACAAGCTAAACAAGGTCTGTCAAACTTGGTAATTACACATTCATCACCTCCGAGATGTGGCGGGGTGATTGGATGCCTTCAGCAAAGAAGCAAGCTTGTCACTCCGGTATTAACAGTTTCATTAGAACACAGTGATTATGCTAAATGAATCAACGCTAGGGCTCGACACCTTGGCCGTGAAACTGAGGAAATACTTAATGCGGCTCCTGATGCGCCGAGACGATGGAGGGTGGGTTCGGGGGGTGAAAATACAAGATCTCGCAGCCATCCTCCATTTGATCGTCTTAAAGGAAATCGGCGAAAATTCCACAGAGGACTCAGATTCACAATTCGGTGACAAAGATGTAATGATACAGAAAATTATCTTCAACAAGTATCGTAAAGGTCAGGGTAATTATATGCCAGATAGAAAAACAAGCCTGACCCTTAGCAATGCATACAATTCCTCATTGATTTTCTACAGACAAAGAGAATTTAATAAATTTAGCTACTGTAACCAGACCAGGTGGTCAATCATTGTCCTATTTTCAAAGCCCTTGATGAGAGATGTGAACTTCCATGGAGAGGCGGCTTTTGATGACAACTACACAACATCCAATAGACTGAAAAATGGTGGAATTAATGGAGATAAACAGAGTGATATCAAGCAAACAAACCAGAGGGAAGTTCAGACTCTGTCTAGAAATGGGAAGTGGGTGGAGCTTCAAAGGAAGGAACGAATGGCTAGGTTAACTGAGGTTAGTCTGGGTGGAGACTATGCGGAAGTGAGCGAGAAGGAGGGCCACGTCCCAAGGCAAATTTGCAGTTCTGAGGACACAACAAGCTTTATTCATGTCAGCAAACAGTGCAGCAATCTCCCAGAGAAATGGGCTTTGTGTCTACAGGGGTCCCAGCAGAGCAGGCTTACAGATCTCTTCAATCTAATGCCTGGAAGTGAAAATGCTAAGAAGCTGCAAGGGCTAGAGCAAAAGAGGTTTGATTTGACAGATGAATACTTGAGCCCTGTCCAGATGGAGGAGGAAGACGACAGGGAGGGAGAGAAATGTGCTATTCTGGAGGACACAATGTCAGTCAGAGAGTCTGAAAGCCATGCGTCCTATGGTAAAAATGACAGGCATGATGGCTTTTCATTGAAATGGTGTAGATATGTATACATGACCCCTCTTTATAAAGAGGTCAGCCATTTACATGCCAGTACTGACAGGCAATTGAAAAATGGTGTCAAACAAACAGCCTTAAAAAAGGTGCGTCTGTTAAGGAATGGTGTAAGTGTCGCTGCGCTGCTTCTGCTCAACGGGGAACACCTCGGAGCACGTAGAGGTGTGAAAGCATCTGGATCTCAAACCCTCGAGCCGCTGGGTGGGGCCCGGACAGACTCCAAATGTAGGCTGATGGAAAAGCCAGATTACTCCTGTCAAAGTGTGGGCAACAATGCCTCCCGGTGCTTTGTTTACCCTGCTTTTCAAAGGCGTTTGTTCTTTGATAAGGCCCCGGAAACGGGCTCGCTGGTGGGAACCCATGGAAAAGAATACACTTTCTATCAATTGTGCCGGTCTTATCCCCCAGAGCGCAGGAACAATGTTCTTCGTCTATCTTTCTCTCTCAGTCAGTTACAAGTAACAATTCAAGCATAGTCCTGCCACGATGATCTTTCAGACTTCTACTGTTTTTACTAATTTCCCCGTCATACACACTGGCACCCGCTCACACACACACACTCTCTATTGACGTGTTTTCGGTCTCTGCGCCACTCTCGGCGTCTGCTCAACGCTCTCTGATATGTGAGTGTGCTGGAGTGGAGAGAGACTGACGGGGCCGCGTGTTTCTCCCCGAAGACTAAAGCTAGAGTTATAATGAAGGGCTCAAAACACCTTCAGGAGCACTATCGAAGAGATGGTCACATGAACAGTGACTGATGATGAATTATAGATTTCAGAAATATCAGAGTGCAGCATTAATAACCAATTCAAACAGATCACAGTGAAAGCCGGTAAAAATTTGAGCGTCACCTTTAAAACTTTTAGTAAGATTTTCACAAACGCGCAAAGATTGTAAATATATCACTATATTGTGGTTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAATTAATAAA
>TU146958
CTTCAGTAAACTAATGGGCAGAAATGAGTATTTTACCTTTATAGAATATATTTCTATATAAAATGTAGTGCATAAAAAGTATTGTAGCAAATCAGCTGCATGACATTACACATATGGTACAATATTTAGTTTCCTTTAGTTTTTTTTTTTTTTCCAACCGCCCTAATTACATAAACACAAAATAATCTCAACCTCCTTTCCTTTTTTTTTTGCAGTGTGCTATTCTGGAGGACACAATGTCAGTCAGAGAGTCTGAAAGCCATGCGTCCTATGGTAAAAATGACAGGCATGATGGCTTTTCATTGAAATGGTGTAGATATGTATACATGACCCCTCTTTATAAAGAGGTCAGCCATTTACATGCCAGTACTGACAGGGTAAGAATCAGAGCCTGGGCTCCTCCTGAAATATGTCTCAATGTTTTGATCACTCCCAGCAGGGGGATT
>TU146970
TTTCAATGTCTTTTCTTCCCTTGGGTTTAAATACTAGATGTATACGGATCTTGAGAAGAAAGCAGGAGGAAGGAGACTGAAACACGCGGCATTAAAAAAAAAAAAAAAAATTAAACAAAAAATCAACTGTGTGCCCTAACAATTTATGACCATTTTCTCACAATTTCCTGCAGTCAATTTAAAGTGGGCTCCGCTGCTTCCTGCATATCTAACAGCCTCCTCAGTGTCTTTATCTACAATTCCTCTTATTTACAGATTGCTGGTGGAACAGCTGCTTCTACACTTGCCCCGAATCCATGAAGTGATGTTTTGCAATATACCATTTAATTTTTAATGCTGATATTCATTTCTCCTTCAAAACACTAGAACTTCCATGGAGAGGCGGCTTTTGATGACAACTACACAACATCCAATAGACTGAAAAATGGTGGAATTAATGGAGATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_03309007_03342583.mRNA False 2257 mRNA 0.44 11 3308515 3342851
TU146958 False 446 lncRNA 0.37 1 3316053 3316498
TU146970 True 448 lncRNA 0.37 1 3340588 3341035

Neighbor

gene id symbol gene type direction distance location
CI01000026_03146190_03159300 NA coding downstream 148775 3145706 ~ 3159740 (-)
CI01000026_02939243_02946057 NA coding downstream 361272 2938778 ~ 2947243 (-)
CI01000026_02846742_02867620 ALX4A, ALX4B, ALX4 coding downstream 440895 2846259 ~ 2867620 (-)
CI01000026_02805926_02807292 NA coding downstream 501017 2805926 ~ 2807498 (-)
CI01000026_02653022_02656755 PHF23B, PHF23 coding downstream 651760 2651645 ~ 2656755 (-)
CI01000026_03353132_03359434 NA coding upstream 9719 3352570 ~ 3359492 (-)
CI01000026_03439507_03490314 PDE3B coding upstream 96656 3438795 ~ 3490503 (-)
CI01000026_03620455_03641230 NA coding upstream 277333 3620184 ~ 3641455 (-)
CI01000026_03691072_03696628 NA coding upstream 347371 3690222 ~ 3698397 (-)
CI01000026_03753185_03765875 LMO1, RBTN1 coding upstream 409730 3752581 ~ 3765875 (-)
G129328 NA non-coding downstream 1078 3307073 ~ 3307437 (-)
G129327 NA non-coding downstream 2086 3306196 ~ 3306429 (-)
G129273 NA non-coding downstream 34885 3272234 ~ 3273630 (-)
G129272 NA non-coding downstream 36909 3268309 ~ 3271606 (-)
G129210 NA non-coding downstream 333241 2975007 ~ 2975274 (-)
G129358 NA non-coding upstream 92798 3435649 ~ 3438249 (-)
G129399 NA non-coding upstream 152306 3495157 ~ 3503106 (-)
G129398 NA non-coding upstream 163071 3505922 ~ 3506877 (-)
G129406 NA non-coding upstream 166906 3509757 ~ 3509995 (-)
G129403 NA non-coding upstream 170220 3513071 ~ 3513826 (-)
G127418 NA other downstream 1572409 1735777 ~ 1736220 (-)
CI01000026_00986386_01002180 NA other downstream 2305926 986182 ~ 1002180 (-)
G129476 NA other upstream 327723 3670574 ~ 3670884 (-)
G129658 NA other upstream 1024445 4367296 ~ 4373069 (-)
G129750 NA other upstream 1470199 4785885 ~ 4820249 (-)
G130256 NA other upstream 2932660 6275511 ~ 6317154 (-)
G129331 NA non-coding downstream 340 3315454 ~ 3315713 (-)

Expression


Co-expression Network