Gene
RNA
| Item | Value |
|---|---|
| gene id | G129201 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 2953598 ~ 2953884 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU146815 | True | 287 | lncRNA | 0.44 | 1 | 2953598 | 2953884 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_02939243_02946057 | NA | coding | downstream | 6355 | 2938778 ~ 2947243 (-) |
| CI01000026_02846742_02867620 | ALX4A, ALX4B, ALX4 | coding | downstream | 85978 | 2846259 ~ 2867620 (-) |
| CI01000026_02805926_02807292 | NA | coding | downstream | 146100 | 2805926 ~ 2807498 (-) |
| CI01000026_02653022_02656755 | PHF23B, PHF23 | coding | downstream | 296843 | 2651645 ~ 2656755 (-) |
| CI01000026_02633084_02640164 | PLSCR3B, PLSCR3 | coding | downstream | 313434 | 2632703 ~ 2640164 (-) |
| CI01000026_03146190_03159300 | NA | coding | upstream | 191822 | 3145706 ~ 3159740 (-) |
| CI01000026_03309007_03342583 | NA | coding | upstream | 354631 | 3308515 ~ 3342851 (-) |
| CI01000026_03353132_03359434 | NA | coding | upstream | 398686 | 3352570 ~ 3359492 (-) |
| CI01000026_03439507_03490314 | PDE3B | coding | upstream | 485623 | 3438795 ~ 3490503 (-) |
| CI01000026_03620455_03641230 | NA | coding | upstream | 666300 | 3620184 ~ 3641455 (-) |
| G129193 | NA | non-coding | downstream | 2085 | 2950727 ~ 2951513 (-) |
| G129190 | NA | non-coding | downstream | 3245 | 2948896 ~ 2950353 (-) |
| G129191 | NA | non-coding | downstream | 17295 | 2929054 ~ 2936303 (-) |
| G129198 | NA | non-coding | downstream | 37652 | 2915743 ~ 2915946 (-) |
| G129195 | NA | non-coding | downstream | 40718 | 2912674 ~ 2912880 (-) |
| G129202 | NA | non-coding | upstream | 2644 | 2956528 ~ 2956861 (-) |
| G129209 | NA | non-coding | upstream | 20687 | 2974571 ~ 2974791 (-) |
| G129210 | NA | non-coding | upstream | 21123 | 2975007 ~ 2975274 (-) |
| G129272 | NA | non-coding | upstream | 314425 | 3268309 ~ 3271606 (-) |
| G129273 | NA | non-coding | upstream | 318350 | 3272234 ~ 3273630 (-) |
| G127418 | NA | other | downstream | 1217492 | 1735777 ~ 1736220 (-) |
| CI01000026_00986386_01002180 | NA | other | downstream | 1951009 | 986182 ~ 1002180 (-) |
| G129476 | NA | other | upstream | 716690 | 3670574 ~ 3670884 (-) |
| G129658 | NA | other | upstream | 1413412 | 4367296 ~ 4373069 (-) |
| G129750 | NA | other | upstream | 1859166 | 4785885 ~ 4820249 (-) |
| G130256 | NA | other | upstream | 3321627 | 6275511 ~ 6317154 (-) |
