RNA id: TU153143


Basic Information

Item Value
RNA id TU153143
length 577
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G134673
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12630223 ~ 12632312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAGAAGCAGATACTGTACATCTAGTGTTAAGGCTCTAGTTATCCTGCTGCAATGACGCAAAAATCAACCCTTCATTTCACTGGGGTCAAATTTTTCCTTATTTTCATCCTTATACAAGGAGTCTTGTCAAAGGAGAACATGAATCCATGGGATTTTGGGGCCACGTCTTTGGGAGATATGGCTGCTGTACCGCCAGAGCCGTCAGACGACATAATTCTGTCAGGATCCGGTGTTGAAGCTGATGTGGAGGAGCCAATCATCACAGAAACTTAAAGACTAATGCAGTTATTTGAAGACAAGAAGAGCCAAGACAGTTACAACTTGTGAACATGATTGTCACACTGCCTGTCTGTACTAAGCATTTTTGGTTTTACATTGCAATAAATGTTGGACATACTGTTGAATTTTGTAGAATTAATAGCCTAATGACAATTACTAATAGAAATTAAATGTTAGAAGCAAAACTTAAAACTATTTTTAGATTAAATCATATTCATTGTCTCATTTCTCTTGTCTTCAAATTCAGAGTGTCACTAAAAAAATAAAATTGAGTGACAGAGGCAGTTTTGAAGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153084 lncRNA downstream 40105 12587948 ~ 12590118 (-) True G134619
TU153051 lncRNA downstream 72890 12550311 ~ 12557333 (-) True G134593
TU153100 lncRNA downstream 234434 12395475 ~ 12395789 (-) True G134635
TU153047 lncRNA downstream 269953 12359897 ~ 12360270 (-) True G134589
TU153046 lncRNA downstream 272830 12357049 ~ 12357393 (-) True G134588
TU153144 lncRNA upstream 1037 12633349 ~ 12634475 (-) True G134674
TU153146 lncRNA upstream 3006 12635318 ~ 12635700 (-) True G134676
TU153148 lncRNA upstream 4273 12636585 ~ 12636798 (-) True G134678
TU153150 lncRNA upstream 150403 12782715 ~ 12782993 (-) True G134680
TU153440 lncRNA upstream 200874 12833186 ~ 12833432 (-) True G134916
CI01000026_12591049_12624688.mRNA mRNA downstream 3785 12590785 ~ 12626438 (-) True CI01000026_12591049_12624688
CI01000026_12570957_12581387.mRNA mRNA downstream 48710 12570795 ~ 12581513 (-) True CI01000026_12570957_12581387
CI01000026_12536781_12546106.mRNA mRNA downstream 83694 12536781 ~ 12546529 (-) True CI01000026_12536781_12546106
CI01000026_12445673_12447183.mRNA mRNA downstream 181522 12445304 ~ 12448701 (-) True CI01000026_12445673_12447183
CI01000026_12444311_12444646.mRNA mRNA downstream 185361 12443976 ~ 12444862 (-) True CI01000026_12444311_12444646
CI01000026_12639230_12645878.mRNA mRNA upstream 6633 12638945 ~ 12645878 (-) True CI01000026_12639230_12645878
CI01000026_12663161_12672818.mRNA mRNA upstream 28952 12661264 ~ 12672818 (-) True CI01000026_12663161_12672818
CI01000026_12712643_12726107.mRNA mRNA upstream 80287 12712599 ~ 12726107 (-) True CI01000026_12712643_12726107
CI01000026_12728675_12752693.mRNA mRNA upstream 96277 12728589 ~ 12752693 (-) True CI01000026_12728675_12752693
CI01000026_12792682_12819124.mRNA mRNA upstream 160370 12792682 ~ 12819124 (-) True CI01000026_12792682_12819124
TU152172 other downstream 1323042 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 1792618 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 1840069 10790055 ~ 10790154 (-) True G133789
TU152143 other downstream 1840069 10790055 ~ 10790154 (-) True G133789
TU151953 other downstream 2281266 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU154700 other upstream 1922605 14554917 ~ 14555436 (-) True G136110
TU156370 other upstream 4124417 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 4174052 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 4350939 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 4436036 17068348 ~ 17069433 (-) True G137967

Expression Profile