RNA id: TU153146


Basic Information

Item Value
RNA id TU153146
length 383
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G134676
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12635318 ~ 12635700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTAGTTGAGAGATTTTTTTTCTTGAGAAAATTTGCCATGTACTGTACCTGATATACAGTATATCCAAAATAACTGATACTGAATCGAATTGCAAGCTTGTGAATCAAAATGCATAACTATGATGACAGACTGGCAGGAAATTATGCAAAACAGAAAAAAAAGTTCAAACAGGGTGATATTGTGACATACTGATTAGCCTAATCTTTCCATTATTGTTAATAATAGTTGCAACCTGCACTCTTAAATGTACATTGAAAATTGTCAGCTGATAAACCATCGGGGACGCGATTATGGGGCCCCCTCCTGGAGATTTGCTTAGGGCCCCCAATAACCTTTGCTCCTTTTGCTCTTTGCTCACAGTGTCCTAATTTATGGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153144 lncRNA downstream 843 12633349 ~ 12634475 (-) True G134674
TU153143 lncRNA downstream 3006 12630223 ~ 12632312 (-) True G134673
TU153084 lncRNA downstream 45200 12587948 ~ 12590118 (-) True G134619
TU153051 lncRNA downstream 77985 12550311 ~ 12557333 (-) True G134593
TU153100 lncRNA downstream 239529 12395475 ~ 12395789 (-) True G134635
TU153148 lncRNA upstream 885 12636585 ~ 12636798 (-) True G134678
TU153150 lncRNA upstream 147015 12782715 ~ 12782993 (-) True G134680
TU153440 lncRNA upstream 197486 12833186 ~ 12833432 (-) True G134916
TU153447 lncRNA upstream 213653 12849353 ~ 12849780 (-) True G134921
TU153458 lncRNA upstream 231551 12867251 ~ 12871739 (-) True G134931
CI01000026_12591049_12624688.mRNA mRNA downstream 8880 12590785 ~ 12626438 (-) True CI01000026_12591049_12624688
CI01000026_12570957_12581387.mRNA mRNA downstream 53805 12570795 ~ 12581513 (-) True CI01000026_12570957_12581387
CI01000026_12536781_12546106.mRNA mRNA downstream 88789 12536781 ~ 12546529 (-) True CI01000026_12536781_12546106
CI01000026_12445673_12447183.mRNA mRNA downstream 186617 12445304 ~ 12448701 (-) True CI01000026_12445673_12447183
CI01000026_12444311_12444646.mRNA mRNA downstream 190456 12443976 ~ 12444862 (-) True CI01000026_12444311_12444646
CI01000026_12639230_12645878.mRNA mRNA upstream 3245 12638945 ~ 12645878 (-) True CI01000026_12639230_12645878
CI01000026_12663161_12672818.mRNA mRNA upstream 25564 12661264 ~ 12672818 (-) True CI01000026_12663161_12672818
CI01000026_12712643_12726107.mRNA mRNA upstream 76899 12712599 ~ 12726107 (-) True CI01000026_12712643_12726107
CI01000026_12728675_12752693.mRNA mRNA upstream 92889 12728589 ~ 12752693 (-) True CI01000026_12728675_12752693
CI01000026_12792682_12819124.mRNA mRNA upstream 156982 12792682 ~ 12819124 (-) True CI01000026_12792682_12819124
TU152172 other downstream 1328137 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 1797713 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 1845164 10790055 ~ 10790154 (-) True G133789
TU152143 other downstream 1845164 10790055 ~ 10790154 (-) True G133789
TU151953 other downstream 2286361 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU154700 other upstream 1919217 14554917 ~ 14555436 (-) True G136110
TU156370 other upstream 4121029 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 4170664 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 4347551 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 4432648 17068348 ~ 17069433 (-) True G137967

Expression Profile