RNA id: TU164687


Basic Information

Item Value
RNA id TU164687
length 317
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G144946
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 419804 ~ 420120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAGGGCGGAGCTTTAACAGCTCACGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAACGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGTGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164652 lncRNA downstream 173730 214539 ~ 246074 (-) True G144915
TU164549 lncRNA downstream 227188 161248 ~ 192616 (-) True G144827
TU164581 lncRNA downstream 282602 136391 ~ 137202 (-) False G144855
TU164580 lncRNA downstream 282602 136882 ~ 137202 (-) True G144855
TU164577 lncRNA downstream 283095 136391 ~ 136709 (-) False G144855
TU164693 lncRNA upstream 30427 450547 ~ 451153 (-) True G144952
TU164702 lncRNA upstream 49943 470063 ~ 470387 (-) True G144961
TU164703 lncRNA upstream 50524 470644 ~ 470854 (-) True G144962
TU164704 lncRNA upstream 51987 472107 ~ 472418 (-) True G144963
TU164710 lncRNA upstream 71795 491915 ~ 521930 (-) True G144965
CI01000028_00363732_00407780.mRNA mRNA downstream 11628 363106 ~ 408176 (-) True CI01000028_00363732_00407780
CI01000028_00346500_00350741.mRNA mRNA downstream 67745 346425 ~ 352059 (-) True CI01000028_00346500_00350741
CI01000028_00331781_00342935.mRNA mRNA downstream 76869 331168 ~ 342935 (-) True CI01000028_00331781_00342935
CI01000028_00137862_00152223.mRNA mRNA downstream 267581 137862 ~ 152223 (-) True CI01000028_00137862_00152223
CI01000028_00133579_00134596.mRNA mRNA downstream 285002 133579 ~ 134802 (-) True CI01000028_00133579_00134596
CI01000028_00443151_00444100.mRNA mRNA upstream 23011 443131 ~ 444100 (-) True CI01000028_00443151_00444100
CI01000028_00444425_00447507.mRNA mRNA upstream 24305 444425 ~ 447507 (-) True CI01000028_00444425_00447507
CI01000028_00474810_00475211.mRNA mRNA upstream 54562 474682 ~ 475211 (-) False CI01000028_00474810_00475211
CI01000028_00534236_00534848.mRNA mRNA upstream 114087 534207 ~ 534848 (-) True CI01000028_00534236_00534848
CI01000028_00563476_00575567.mRNA mRNA upstream 141991 562111 ~ 578365 (-) True CI01000028_00563476_00575567
TU164584 other downstream 283928 135392 ~ 135876 (-) False G144855
TU164582 other downstream 283947 135392 ~ 135857 (-) False G144855
TU164620 other upstream 53489 475313 ~ 475346 (-) True G144886
TU166103 other upstream 1677450 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 1727258 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 2021212 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 6279393 6699513 ~ 6701240 (-) True G149329

Expression Profile