RNA id: TU165845


Basic Information

Item Value
RNA id TU165845
length 673
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G145967
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1520721 ~ 1533459 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCTTTAGAGAAGAGGAAGAGTTGTAGTAGAGCGTTGTTGTCATGCCGTCATTTTACGCTGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCGTTCAGAAACGTCCAGATGCATTCTAAAAGTTGTAACTTCTTCCCGAGTCTCTCCATCAGTGTCCAACTCCGGTTTGAACACTTGAACGACTTCCATTTTCTTATATTTCTATTATGTATTTTATTTGTAAGAAAATTTAAGAACATTTGAACTTGTCTTGCTCTGTATCATCAAATTCACGCTTCTTCGCCACTCTCTGCAATCCTGCCCATTACACAAACAGATTTACCATATATGCCACCCAAACACATGCAAATTCACCAATCATAGCACTGATTCACCAACCTGAACACTAATCTCTCTCAACACGCTCTCCGTCTGAACGAAGAGATACTTAATTAATTCATTCTTTGGTGTCTCTCTGTGTTGTCTTATGCTAATGTTTTCATCACCACTCACTGTATCATTTCGTTATCATTCATTTCAGTAATAATCCTCCAGTGAAGCTGCAGCTGGGGTTGTGTGCTCTGCTGAACCTCCCCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165831 lncRNA downstream 31775 1488472 ~ 1488946 (-) True G145954
TU165828 lncRNA downstream 33118 1487224 ~ 1487603 (-) True G145951
TU165823 lncRNA downstream 36697 1483800 ~ 1484024 (-) True G145946
TU165821 lncRNA downstream 44533 1475871 ~ 1476188 (-) True G145944
TU165798 lncRNA downstream 105050 1415432 ~ 1415671 (-) True G145922
TU165832 lncRNA upstream 44177 1577636 ~ 1577909 (-) True G145955
TU165874 lncRNA upstream 55355 1588814 ~ 1589171 (-) False CI01000028_01582515_01591864
TU165875 lncRNA upstream 57619 1591078 ~ 1591301 (-) True G145997
TU165876 lncRNA upstream 58093 1591552 ~ 1591829 (-) True CI01000028_01582515_01591864
TU165938 lncRNA upstream 160209 1693668 ~ 1693710 (-) True G146055
CI01000028_01403859_01408636.mRNA mRNA downstream 112041 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01381059_01398155.mRNA mRNA downstream 122364 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_01011845_01028684.mRNA mRNA downstream 491116 1011608 ~ 1029605 (-) False CI01000028_01011845_01028684
CI01000028_00801939_00810126.mRNA mRNA downstream 710595 801323 ~ 810126 (-) True CI01000028_00801939_00810126
CI01000028_00767836_00797742.mRNA mRNA downstream 721336 767679 ~ 799385 (-) True CI01000028_00767836_00797742
CI01000028_01582515_01591864.mRNA mRNA upstream 48570 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
CI01000028_01707320_01709779.mRNA mRNA upstream 173299 1706758 ~ 1710606 (-) True CI01000028_01707320_01709779
CI01000028_01770721_01773265.mRNA mRNA upstream 237182 1770641 ~ 1773344 (-) False CI01000028_01770721_01773265
CI01000028_02036977_02046469.mRNA mRNA upstream 502850 2036309 ~ 2046469 (-) True CI01000028_02036977_02046469
CI01000028_02187324_02188153.mRNA mRNA upstream 653136 2186595 ~ 2188153 (-) True CI01000028_02187324_02188153
TU164620 other downstream 1045375 475313 ~ 475346 (-) True G144886
TU164584 other downstream 1384845 135392 ~ 135876 (-) False G144855
TU164582 other downstream 1384864 135392 ~ 135857 (-) False G144855
TU166103 other upstream 564111 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 613919 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 907873 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 5166054 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 5437298 6971561 ~ 6971711 (-) True G149468

Expression Profile