RNA id: CI01000028_00767836_00797742.mRNA


Basic Information

Item Value
RNA id CI01000028_00767836_00797742.mRNA
length 2976
RNA type mRNA
GC content 0.38
exon number 6
gene id CI01000028_00767836_00797742
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 767679 ~ 799385 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTTGTGCAGACCCAGTCCCAGTACTCAAGAATAAGTTCCAAGAGTCATTAATATTCATATTAGATTTATAAAGTCAGCTAAACTGCAAATGTGTTGTGTTGTCCAGCAAAGTATTTCAAGTTTCAAGGCCAAGGATTTTATTTTTCTTCTTCATGCATTATTCTAGACCCAAGTGCATAAATTGAATTGAATTTAACCCACACCATTAGGTGGCACTAGACCTCTATAGTACAGAAAATACAGTCAGGAAAAGTGGGGGCACTTTTTTTTTTTTTCCGTGAAAATATTCACACCCAAATTCTCCAAAGGCAGAAAATATGTCAGTGATATATAAGAATGCTGAAGAGTAATGGATCAGAACAACGTTCGTCACCTTTAAACTTGATCTTGTGTTGTTTGTAAAGATCAGTGATGTCCCACAAAACTCTAATCAGCAGCTGTGGTTGGTGGACACGTGGTAATGTCAATAACCTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTACTTACTTACTTACTTACTTACTTACTTACTTACTTACTTATTTGTTTAATTTCTACAAAGACTTTAGATGCACTATTTACCATCAAACAAACATTAGCCATTCTGGTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTTATTTATGTATTTATTTTATCATTTGTTTGTTTGTTTGTTTGTTTATTTTCTACAAAGACTTTAGATGCACTATTTACCATGAAACGAACATTAGCCATTCTAGTGTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTATGCGTAGGTTTCTTTATTTATTAATTCATTCATTCATTCATTCATTCATTCATTCATTTATGTATTTATTTATTTATTTATTTTCTACAAAGACTTTAGATGCACTATTTACCATGAAACGAACATTAGCTATTCTAGTGTTTATTTTATTTTATTTTATTTTATTTTATTTTTATGCGTAGGTTTCTTTATTTATTAATTCATTCATTCATTCATTCATTCATTCATTCATTCATTTATGTATTTATTTATTTATTTATTTTCTACAAAGACTTTAGATGCACTATTTACAGTGAAACGAACATTGGCCATTCTAGTGTTCATTTTATTTTATTTTATTTTATTTTATTTTTTGGGGGAGGGGGCATTTCTGGTTCACTTGGTGGCCAATGAGAAAAAAGACATGATGAAAATAAAATGTAAGATGTGTTAGGTTCCATACAGTATTCATATAAAGTCAGCTAAACTGCAAATGTGTTGTGTATATATATATATATATATATATATATATATATTGTTATATATATGACCATATTCTGGTCATATTGATTCTGCTAGTGTTTAATTTTCCACACCCACCACCATCTCCATGTCCAAGTTCCTCTTATCAGAAGGTGTAAATCACCGTCTGGCTGTCATGACGAAGGGTGCTCCGGCATAGTGAGGGTCTTGTGGGCAGGATGTGGCGGTGAGGCCTGGTGTCAGCAGTGTCAGGTTCAGCTTCCTGTGTCCTAATCATTTCAACATGGAGGCCCATGCCTGGGCTCTGGCTGCTAAACCGCCAACCTGGGCCTCACTCCGCCAGCACTGCAAAGAAAGCAGCAGTGTGGACCTCCACCCCTCAGCCCCCTTCCGCTCCCTCGGCTGTACAACCATAAATATTAAAGATCTGCTATATGAGAGCGGTGTAAAGTTTAGGGAGTTGGGGGGCGGCGGAAATGGGGCCATCAGCCAGCAGAGATCAGGCACAGGGTGCTTCGCTGGAGGCCAGTTAGGGAAGACCTCATCAATCCCGTCTGGCAATCGTACAACATTCCCACGCCACCGCCGGCAAAGGCCATCGCTGGTCCTCCCATGCAAGACGACTTATCAGGGCCATGCAGCAGGGAAACAGGAAGGGAGGAGATCCAGAGACGTGGAGCCTTCAACATGGTGGTCTGCTCCCTCACAGCAGGAGGGTTGGGGGTCTCTGAATGTGCATTCACAGGTCTGGCCCCTCTCTGTGATGAATGAGAGAAACCTGGGGAATGACGTTGGGTTTGGTTTGTTTGGTTGTTGGGTTCTCTCTGTGTCGCTCCATTATGAGCCAGCCAAAACAACTCCTGAAAGCAAAAAGTTCCCCAGGAAATTGCCTAATAACAATAAAGAATCCAGGGGCAAATGGAGTCCATGCTGTTACGGAGGCCGTTCCAGAGGAGCTCCAAAGAGGAGGACCGGAGGAGCTCTCCAATGGGAGAAAATCTGGGACACTTGGAACCAATTAAAAGCACCAAGGCTTGCCAGCAGCTCCTATGCTTTCTTATTCCCCCCCTCTTCCCCTCCTCTTCACTTTCTCTCCCTTTTCATCTCTTTTTCTTCACTTGGCTATGTGTACAGGAAAGCTTCCTTCCACATGCTATTTGTGGATCCAAAAGATCTGGGTACAGGCAAGCTGGAGAGGATGAAGGCTTTGTGGATTATGAATGAGGCTGTCTGCTTTCCCCCAGCTGTTCTCCATTACAGAGCCATCGTGTGTGTGATACGAGCCAGAGCTCAGCCAAAGCTTAAGCCCTGCCAGGTAGCGGTGATGAGACCCAGGGTTCAGGTGCGTGTGAGTAAAGTCAAGAGCTGTAACCATTACTTTCCTGGCACTGAGCCAATGATGAAAACAGGAGATTTGACTTCTCTAAACTGTTTGGGCCAGTTTTATGAAACTGTGTAAATCAGTGAGGATAGAGACAGAACAAATGAGAAATTGAGGACGGGGGAGAAAGAGACAGAGGTGGAAGGTCACTACCATGTTTTTTCTACTTCTACAGTCGAGACGACTTGAATGAGCAATCATTTTGTTTTAAAATGAACAGATGTTCAATAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164811 lncRNA downstream 39187 728270 ~ 728492 (-) True G145048
TU164741 lncRNA downstream 41679 664690 ~ 726000 (-) True G144988
TU164754 lncRNA downstream 51032 711052 ~ 716647 (-) True G144992
TU164771 lncRNA downstream 209835 557592 ~ 557844 (-) True G145009
TU164747 lncRNA downstream 233479 525846 ~ 534200 (-) True G144989
TU164886 lncRNA upstream 37967 837352 ~ 837568 (-) True G145108
TU164891 lncRNA upstream 47860 847245 ~ 847492 (-) True G145113
TU164926 lncRNA upstream 135091 934476 ~ 934739 (-) True G145141
TU164937 lncRNA upstream 162731 962116 ~ 962531 (-) True G145152
TU164940 lncRNA upstream 173561 972946 ~ 1057319 (-) True G145155
CI01000028_00704858_00705817.mRNA mRNA downstream 60912 704770 ~ 706767 (-) True CI01000028_00704858_00705817
CI01000028_00616942_00640490.mRNA mRNA downstream 125503 616390 ~ 642176 (-) True CI01000028_00616942_00640490
CI01000028_00563476_00575567.mRNA mRNA downstream 189314 562111 ~ 578365 (-) True CI01000028_00563476_00575567
CI01000028_00534236_00534848.mRNA mRNA downstream 232831 534207 ~ 534848 (-) True CI01000028_00534236_00534848
CI01000028_00474810_00475211.mRNA mRNA downstream 292468 474682 ~ 475211 (-) False CI01000028_00474810_00475211
CI01000028_00801939_00810126.mRNA mRNA upstream 1938 801323 ~ 810126 (-) True CI01000028_00801939_00810126
CI01000028_01011845_01028684.mRNA mRNA upstream 212223 1011608 ~ 1029605 (-) False CI01000028_01011845_01028684
CI01000028_01381059_01398155.mRNA mRNA upstream 579787 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_01403859_01408636.mRNA mRNA upstream 604321 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01582515_01591864.mRNA mRNA upstream 782644 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
TU164620 other downstream 292333 475313 ~ 475346 (-) True G144886
TU164584 other downstream 631803 135392 ~ 135876 (-) False G144855
TU164582 other downstream 631822 135392 ~ 135857 (-) False G144855
TU166103 other upstream 1298185 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 1347993 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 1641947 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 5900128 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 6171372 6971561 ~ 6971711 (-) True G149468

Expression Profile