RNA id: TU164940


Basic Information

Item Value
RNA id TU164940
length 245
lncRNA type read_through
GC content 0.49
exon number 2
gene id G145155
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 972946 ~ 1057319 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGATGTTAGCAGCAGGTCCTTTAAGTCCTGTAAGTTGTGAGGTGGAGCCTCCATGGATCGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGCCAAGTCAACACCTCAAACTCATTGTTGTGCTCCTCAAACCATTCCTGAACCATTTTTGCTTTGTGGCAGGAGCATTATCCTGCTGAAAGAGGCCACAGCCACCAGGGAATACCGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164937 lncRNA downstream 10415 962116 ~ 962531 (-) True G145152
TU164926 lncRNA downstream 38207 934476 ~ 934739 (-) True G145141
TU164891 lncRNA downstream 125454 847245 ~ 847492 (-) True G145113
TU164886 lncRNA downstream 135378 837352 ~ 837568 (-) True G145108
TU164811 lncRNA downstream 244454 728270 ~ 728492 (-) True G145048
TU165026 lncRNA upstream 41802 1099121 ~ 1099438 (-) True G145237
TU165068 lncRNA upstream 154516 1211835 ~ 1212278 (-) True G145279
TU165074 lncRNA upstream 169160 1226479 ~ 1238778 (-) True G145282
TU165087 lncRNA upstream 189965 1247284 ~ 1255993 (-) True G145293
TU165091 lncRNA upstream 201299 1258618 ~ 1258842 (-) True G145296
CI01000028_00801939_00810126.mRNA mRNA downstream 162820 801323 ~ 810126 (-) True CI01000028_00801939_00810126
CI01000028_00767836_00797742.mRNA mRNA downstream 173561 767679 ~ 799385 (-) True CI01000028_00767836_00797742
CI01000028_00704858_00705817.mRNA mRNA downstream 266179 704770 ~ 706767 (-) True CI01000028_00704858_00705817
CI01000028_00616942_00640490.mRNA mRNA downstream 330770 616390 ~ 642176 (-) True CI01000028_00616942_00640490
CI01000028_00563476_00575567.mRNA mRNA downstream 394581 562111 ~ 578365 (-) True CI01000028_00563476_00575567
CI01000028_01381059_01398155.mRNA mRNA upstream 321853 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_01403859_01408636.mRNA mRNA upstream 346387 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01582515_01591864.mRNA mRNA upstream 524710 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
CI01000028_01707320_01709779.mRNA mRNA upstream 649439 1706758 ~ 1710606 (-) True CI01000028_01707320_01709779
CI01000028_01770721_01773265.mRNA mRNA upstream 713322 1770641 ~ 1773344 (-) False CI01000028_01770721_01773265
TU164620 other downstream 497600 475313 ~ 475346 (-) True G144886
TU164584 other downstream 837070 135392 ~ 135876 (-) False G144855
TU164582 other downstream 837089 135392 ~ 135857 (-) False G144855
TU166103 other upstream 1040251 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 1090059 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 1384013 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 5642194 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 5913438 6971561 ~ 6971711 (-) True G149468

Expression Profile