RNA id: TU164937


Basic Information

Item Value
RNA id TU164937
length 416
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G145152
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 962116 ~ 962531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACAGTTTTCCACTTTACCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATGTTTAGATATGGCTTCTTTTTTGACCTATAGAGTTTTAGCCGGCAACGGCGAATGGCACAGTGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCGAAGATCACAGGCATCCAGTATGGTTTTCCGGCCTTGACTCTTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164926 lncRNA downstream 27377 934476 ~ 934739 (-) True G145141
TU164891 lncRNA downstream 114624 847245 ~ 847492 (-) True G145113
TU164886 lncRNA downstream 124548 837352 ~ 837568 (-) True G145108
TU164811 lncRNA downstream 233624 728270 ~ 728492 (-) True G145048
TU164741 lncRNA downstream 236116 664690 ~ 726000 (-) True G144988
TU164940 lncRNA upstream 10415 972946 ~ 1057319 (-) True G145155
TU164966 lncRNA upstream 65642 1172762 ~ 1214718 (-) True G145180
TU165026 lncRNA upstream 136590 1099121 ~ 1099438 (-) True G145237
TU165068 lncRNA upstream 249304 1211835 ~ 1212278 (-) True G145279
TU165074 lncRNA upstream 263948 1226479 ~ 1238778 (-) True G145282
CI01000028_00801939_00810126.mRNA mRNA downstream 151990 801323 ~ 810126 (-) True CI01000028_00801939_00810126
CI01000028_00767836_00797742.mRNA mRNA downstream 162731 767679 ~ 799385 (-) True CI01000028_00767836_00797742
CI01000028_00704858_00705817.mRNA mRNA downstream 255349 704770 ~ 706767 (-) True CI01000028_00704858_00705817
CI01000028_00616942_00640490.mRNA mRNA downstream 319940 616390 ~ 642176 (-) True CI01000028_00616942_00640490
CI01000028_00563476_00575567.mRNA mRNA downstream 383751 562111 ~ 578365 (-) True CI01000028_00563476_00575567
CI01000028_01011845_01028684.mRNA mRNA upstream 49077 1011608 ~ 1029605 (-) False CI01000028_01011845_01028684
CI01000028_01381059_01398155.mRNA mRNA upstream 416641 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_01403859_01408636.mRNA mRNA upstream 441175 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01582515_01591864.mRNA mRNA upstream 619498 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
CI01000028_01707320_01709779.mRNA mRNA upstream 744227 1706758 ~ 1710606 (-) True CI01000028_01707320_01709779
TU164620 other downstream 486770 475313 ~ 475346 (-) True G144886
TU164584 other downstream 826240 135392 ~ 135876 (-) False G144855
TU164582 other downstream 826259 135392 ~ 135857 (-) False G144855
TU166103 other upstream 1135039 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 1184847 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 1478801 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 5736982 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 6008226 6971561 ~ 6971711 (-) True G149468

Expression Profile