RNA id: TU165068


Basic Information

Item Value
RNA id TU165068
length 410
lncRNA type intronic
GC content 0.35
exon number 2
gene id G145279
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1211835 ~ 1212278 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGTACAGTGGGGGAAGTTTTAATCTTCTGATTGGTCAGTTTGTATGTCTCACATTTGGGTTTCAGTCACATGGTCAAGGAAGGGATAAAAGAAGATTGTAACTATTGCTCTGGCTCTTTGATTCTCTGCTCTTTTTCTGGGCTCTCTTTGATTCTTGGCTTTTCTTGGGCACTCTCTGGCCCTCTCTATCTCTCAGGTAACTTTTTACATACATGCTGGGCACAATTAATGGTATATGATTTTATCATCTCATACATCTATTTTGTAATTATTTTAAGTGTAACCATAATCAGATATTGCCATTAAACCCTTTCAATTACAAATTAATTGTGCTAACTAGTTTTGATTTAGTATTAACATTAATGTGCTCCCTATTGCAATACAATATTGTCACACTATAGCAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165026 lncRNA downstream 112397 1099121 ~ 1099438 (-) True G145237
TU164940 lncRNA downstream 154516 972946 ~ 1057319 (-) True G145155
TU164937 lncRNA downstream 249304 962116 ~ 962531 (-) True G145152
TU164926 lncRNA downstream 277096 934476 ~ 934739 (-) True G145141
TU164891 lncRNA downstream 364343 847245 ~ 847492 (-) True G145113
TU165074 lncRNA upstream 14201 1226479 ~ 1238778 (-) True G145282
TU165087 lncRNA upstream 35006 1247284 ~ 1255993 (-) True G145293
TU165091 lncRNA upstream 46340 1258618 ~ 1258842 (-) True G145296
TU165092 lncRNA upstream 46925 1259203 ~ 1259465 (-) True G145297
TU165110 lncRNA upstream 83352 1295630 ~ 1295935 (-) True G145315
CI01000028_01011845_01028684.mRNA mRNA downstream 182230 1011608 ~ 1029605 (-) False CI01000028_01011845_01028684
CI01000028_00801939_00810126.mRNA mRNA downstream 401709 801323 ~ 810126 (-) True CI01000028_00801939_00810126
CI01000028_00767836_00797742.mRNA mRNA downstream 412450 767679 ~ 799385 (-) True CI01000028_00767836_00797742
CI01000028_00704858_00705817.mRNA mRNA downstream 505068 704770 ~ 706767 (-) True CI01000028_00704858_00705817
CI01000028_00616942_00640490.mRNA mRNA downstream 569659 616390 ~ 642176 (-) True CI01000028_00616942_00640490
CI01000028_01381059_01398155.mRNA mRNA upstream 166894 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_01403859_01408636.mRNA mRNA upstream 191428 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01582515_01591864.mRNA mRNA upstream 369751 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
CI01000028_01707320_01709779.mRNA mRNA upstream 494480 1706758 ~ 1710606 (-) True CI01000028_01707320_01709779
CI01000028_01770721_01773265.mRNA mRNA upstream 558363 1770641 ~ 1773344 (-) False CI01000028_01770721_01773265
TU164620 other downstream 736489 475313 ~ 475346 (-) True G144886
TU164584 other downstream 1075959 135392 ~ 135876 (-) False G144855
TU164582 other downstream 1075978 135392 ~ 135857 (-) False G144855
TU166103 other upstream 885292 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 935100 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 1229054 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 5487235 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 5758479 6971561 ~ 6971711 (-) True G149468

Expression Profile