RNA id: TU176301


Basic Information

Item Value
RNA id TU176301
length 403
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G155274
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6852476 ~ 6852878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCTGGAAGGTCTCCCTCCTCTTTAGCCCGGAGGACACGGCGTCCGTGATTTCCAACAAGAATGTCAAATTTGGACTCGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCGTGATAGAGCTTTAGTTGGCATCTGCAGATGGCACGGCGGATTGTGTTTACCGACAGTGGTTTCTGGAAGTATTCCTGGGCCCAATTAATAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTCGTCTGAGGGCCCGAAGACCACGGGCATCCAATTAAAGTCTTCGGCCTTGTCCCTTACGCACAGAGATTTCTCCAGTTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176280 lncRNA upstream 100698 6751287 ~ 6751778 (+) True G155253
TU176276 lncRNA upstream 104914 6744832 ~ 6747562 (+) True G155249
TU176261 lncRNA upstream 129919 6722344 ~ 6722557 (+) True G155235
TU176274 lncRNA upstream 130292 6721963 ~ 6722184 (+) True G155248
TU176262 lncRNA upstream 162539 6689281 ~ 6689937 (+) True G155236
TU176306 lncRNA downstream 53497 6906375 ~ 6908633 (+) True CI01000029_06906861_06907157
TU176398 lncRNA downstream 148561 7001439 ~ 7001888 (+) True G155357
TU176408 lncRNA downstream 158218 7011096 ~ 7011301 (+) True G155367
TU176430 lncRNA downstream 212827 7065705 ~ 7066055 (+) True G155389
TU176440 lncRNA downstream 221414 7074292 ~ 7074548 (+) True G155391
CI01000029_06834812_06849277.mRNA mRNA upstream 2958 6833577 ~ 6849518 (+) True CI01000029_06834812_06849277
CI01000029_06824397_06831521.mRNA mRNA upstream 19805 6823629 ~ 6832671 (+) True CI01000029_06824397_06831521
CI01000029_06775631_06791278.mRNA mRNA upstream 61130 6775631 ~ 6791346 (+) True CI01000029_06775631_06791278
CI01000029_06724205_06734079.mRNA mRNA upstream 116894 6724205 ~ 6735582 (+) True CI01000029_06724205_06734079
CI01000029_06494856_06495812.mRNA mRNA upstream 356629 6494391 ~ 6495847 (+) True CI01000029_06494856_06495812
CI01000029_06865685_06903896.mRNA mRNA downstream 12807 6865685 ~ 6903896 (+) True CI01000029_06865685_06903896
CI01000029_06906861_06907157.mRNA mRNA downstream 52956 6905834 ~ 6907387 (+) False CI01000029_06906861_06907157
CI01000029_06923683_06924032.mRNA mRNA downstream 70350 6923228 ~ 6924085 (+) True CI01000029_06923683_06924032
CI01000029_07132444_07166752.mRNA mRNA downstream 279566 7132444 ~ 7166930 (+) True CI01000029_07132444_07166752
CI01000029_07206718_07211765.mRNA mRNA downstream 352809 7205687 ~ 7212408 (+) True CI01000029_07206718_07211765
TU176095 other upstream 362182 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 362182 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 564078 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1382130 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 1580941 5271020 ~ 5271535 (+) True G154587
TU176307 other downstream 53310 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 781955 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 1078602 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 2111940 8964818 ~ 9064541 (+) False G156007

Expression Profile