RNA id: TU176280


Basic Information

Item Value
RNA id TU176280
length 206
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G155253
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6751287 ~ 6751778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCATTTCTCTCCTCCGTTAGTGTCAGACGGCACTCAAGCAGCTGGGACTCGCTCTCCACGTCCTCTTCTGACTTATCTTGCTTGCCAACAAGTTTCTGGAGACGTTGGTCCAGATACTCCTGTCGTTCAGTTAGAGCCATGAGCCACTGGGCCCTCAGTCTCTCCAGATCAAACTCCTGATAACTGTCCACGTCTTTATCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176276 lncRNA upstream 3725 6744832 ~ 6747562 (+) True G155249
TU176261 lncRNA upstream 28730 6722344 ~ 6722557 (+) True G155235
TU176274 lncRNA upstream 29103 6721963 ~ 6722184 (+) True G155248
TU176262 lncRNA upstream 61350 6689281 ~ 6689937 (+) True G155236
TU176244 lncRNA upstream 62209 6688755 ~ 6689078 (+) True G155218
TU176301 lncRNA downstream 100698 6852476 ~ 6852878 (+) True G155274
TU176306 lncRNA downstream 154597 6906375 ~ 6908633 (+) True CI01000029_06906861_06907157
TU176398 lncRNA downstream 249661 7001439 ~ 7001888 (+) True G155357
TU176408 lncRNA downstream 259318 7011096 ~ 7011301 (+) True G155367
TU176430 lncRNA downstream 313927 7065705 ~ 7066055 (+) True G155389
CI01000029_06724205_06734079.mRNA mRNA upstream 15705 6724205 ~ 6735582 (+) True CI01000029_06724205_06734079
CI01000029_06494856_06495812.mRNA mRNA upstream 255440 6494391 ~ 6495847 (+) True CI01000029_06494856_06495812
CI01000029_06453008_06476863.mRNA mRNA upstream 274197 6453008 ~ 6477090 (+) True CI01000029_06453008_06476863
CI01000029_06443365_06447942.mRNA mRNA upstream 303345 6443365 ~ 6447942 (+) True CI01000029_06443365_06447942
CI01000029_06347167_06348123.mRNA mRNA upstream 403118 6346660 ~ 6348169 (+) True CI01000029_06347167_06348123
CI01000029_06775631_06791278.mRNA mRNA downstream 23853 6775631 ~ 6791346 (+) True CI01000029_06775631_06791278
CI01000029_06824397_06831521.mRNA mRNA downstream 71851 6823629 ~ 6832671 (+) True CI01000029_06824397_06831521
CI01000029_06834812_06849277.mRNA mRNA downstream 81799 6833577 ~ 6849518 (+) True CI01000029_06834812_06849277
CI01000029_06865685_06903896.mRNA mRNA downstream 113907 6865685 ~ 6903896 (+) True CI01000029_06865685_06903896
CI01000029_06906861_06907157.mRNA mRNA downstream 154056 6905834 ~ 6907387 (+) False CI01000029_06906861_06907157
TU176095 other upstream 260993 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 260993 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 462889 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1280941 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 1479752 5271020 ~ 5271535 (+) True G154587
TU176307 other downstream 154410 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 883055 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 1179702 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 2213040 8964818 ~ 9064541 (+) False G156007

Expression Profile