RNA id: TU176519


Basic Information

Item Value
RNA id TU176519
length 231
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G155457
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7418805 ~ 7419035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGGCACAACGCGGAGCGGAGTATTATAGTGTTAAAGTGTTATAAATTCACTGTAAACCACGGCTTCATGGAGCTTATTGCTTTTATAAAATGGTTACCACACAATACAAATATTAAAACCAAAAAATATGTATCAATGCAACTTTCATGAAGTAAAATCATTAAAAGCCTTCCTTCCGCTGGAAAAAATAGTCCCTGATCGTGAACAGCAACAGAAGTTACATTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176511 lncRNA upstream 1294 7417168 ~ 7417511 (+) True G155455
TU176510 lncRNA upstream 14573 7403045 ~ 7404232 (+) True G155454
TU176509 lncRNA upstream 15796 7402063 ~ 7403009 (+) True G155453
TU176498 lncRNA upstream 37396 7381172 ~ 7381409 (+) True G155444
TU176485 lncRNA upstream 107772 7310825 ~ 7311033 (+) True G155431
TU176532 lncRNA downstream 34737 7453772 ~ 7454356 (+) True G155463
TU176376 lncRNA downstream 46546 7465581 ~ 7468513 (+) True G155335
TU176535 lncRNA downstream 54310 7473345 ~ 7473553 (+) True G155466
TU176537 lncRNA downstream 55049 7474084 ~ 7474354 (+) True G155468
TU176538 lncRNA downstream 56705 7475740 ~ 7475989 (+) True G155469
CI01000029_07365981_07371241.mRNA mRNA upstream 47204 7365981 ~ 7371601 (+) True CI01000029_07365981_07371241
CI01000029_07338994_07342252.mRNA mRNA upstream 76063 7338994 ~ 7342742 (+) True CI01000029_07338994_07342252
CI01000029_07304652_07330373.mRNA mRNA upstream 88349 7304652 ~ 7330456 (+) True CI01000029_07304652_07330373
CI01000029_07252129_07298828.mRNA mRNA upstream 118959 7252129 ~ 7299846 (+) True CI01000029_07252129_07298828
CI01000029_07214426_07214941.mRNA mRNA upstream 203816 7214426 ~ 7214989 (+) True CI01000029_07214426_07214941
CI01000029_07426889_07428262.mRNA mRNA downstream 5404 7424439 ~ 7428443 (+) True CI01000029_07426889_07428262
CI01000029_07500425_07501888.mRNA mRNA downstream 81290 7500325 ~ 7502032 (+) True CI01000029_07500425_07501888
CI01000029_07503905_07506541.mRNA mRNA downstream 84870 7503905 ~ 7506835 (+) True CI01000029_07503905_07506541
CI01000029_07514095_07516740.mRNA mRNA downstream 94971 7514006 ~ 7516742 (+) True CI01000029_07514095_07516740
CI01000029_07540982_07543852.mRNA mRNA downstream 119907 7538942 ~ 7543895 (+) True CI01000029_07540982_07543852
TU176307 other upstream 511373 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 928511 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 928511 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1130407 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1948459 5457241 ~ 5457472 (+) True G154531
TU176602 other downstream 215798 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 512445 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1545783 8964818 ~ 9064541 (+) False G156007

Expression Profile