RNA id: TU193080


Basic Information

Item Value
RNA id TU193080
length 255
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G169947
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2590361 ~ 2590615 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTTTTTTAAAGAGTTTGTATTCACGATTTTATTTGAGCTTGAAGGGAATTTCATGTTTTAAAGTACCCCTGAAATCAAGTTTTTTAGCTTTTAGTATGAATATGTTAGCCTTAAGGTTATGAATAAGCTGGTGTGTTCCAAAACAATGACAAAATTCGCATTTAGGAGATATAAGCATTCAAAACTTACAGTCTCTCACTTCTGCTAAAATGGATCATAGATTTTCATGACATCACAACGCACTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193079 lncRNA upstream 1126 2588940 ~ 2589235 (+) True G169946
TU193058 lncRNA upstream 2332 2548634 ~ 2588029 (+) False G169927
TU193056 lncRNA upstream 2332 2584972 ~ 2588029 (+) False G169927
TU193059 lncRNA upstream 2332 2584972 ~ 2588029 (+) True G169927
TU193043 lncRNA upstream 79667 2509779 ~ 2510694 (+) True G169921
TU193109 lncRNA downstream 64581 2655196 ~ 2658101 (+) True G169974
TU193169 lncRNA downstream 76546 2667161 ~ 2667374 (+) True G169996
TU193148 lncRNA downstream 119683 2710298 ~ 2714596 (+) False G169983
TU193146 lncRNA downstream 119866 2710481 ~ 2714596 (+) False G169983
TU193149 lncRNA downstream 120146 2710761 ~ 2714596 (+) False G169983
CI01000034_02563086_02564052.mRNA mRNA upstream 26189 2562938 ~ 2564172 (+) True CI01000034_02563086_02564052
CI01000034_02550332_02552258.mRNA mRNA upstream 37522 2550332 ~ 2552839 (+) True CI01000034_02550332_02552258
CI01000034_02421189_02423360.mRNA mRNA upstream 166834 2421026 ~ 2423527 (+) True CI01000034_02421189_02423360
CI01000034_02275470_02281951.mRNA mRNA upstream 307757 2274601 ~ 2282604 (+) True CI01000034_02275470_02281951
CI01000034_02256162_02260170.mRNA mRNA upstream 329897 2255765 ~ 2260464 (+) True CI01000034_02256162_02260170
CI01000034_02662209_02664649.mRNA mRNA downstream 71594 2662209 ~ 2665540 (+) True CI01000034_02662209_02664649
CI01000034_02688043_02705526.mRNA mRNA downstream 97330 2687945 ~ 2705564 (+) True CI01000034_02688043_02705526
CI01000034_02770255_02774341.mRNA mRNA downstream 179484 2770099 ~ 2774567 (+) False CI01000034_02770255_02774341
CI01000034_02957414_02963572.mRNA mRNA downstream 366480 2957095 ~ 2964031 (+) True CI01000034_02957414_02963572
CI01000034_03145811_03149071.mRNA mRNA downstream 555010 3145625 ~ 3149071 (+) True CI01000034_03145811_03149071
TU192920 other upstream 252671 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 859184 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 1279483 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 1396801 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 1471342 1103540 ~ 1119019 (+) True G169357
TU193348 other downstream 843521 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 1534485 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 1604023 4194638 ~ 4194993 (+) True G170522

Expression Profile