RNA id: TCONS_00000132


Basic Information

Item Value
RNA id TCONS_00000132
length 936
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_000067
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6161930 ~ 6185532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttttgatgtaccaaaaacatttcctaaaggtTTACATCAATTACACTTACATCATATACatcatatgaACCTGGATCCAAATGCCGAAACTTATATGAACTTTATGAAGAAGCACTGCTGTTATGATGCAATTCCTACCAGCTGCAAACTGGTCATTTTTGACACAACACTGCAGGTGAAGAAGGCCTTCTTTGCATTGGTGGCCAACGGTTTAAGAGCGGCTCCTCTCTGGGACCACAAACTGCAGAGATTTGTGGGTATGCTGACGATCACAGATTTCATTAATATTCTGCATCGGTACTACAGATCTCCTATGGTTCAGATCTATGAACTGGAGGACCTCTTTGACGCCGTCTACTCTTTACTGAAGCACAAAATCCACAGGCTGCCGGTCATTGACCCAGAGTCTGGAAATGTCCTTCACATACTGACCCATAAGAGGATCCTCAAGTTCCTTCATATATTCGGAACCACTGTGCCAAAGCCTCGCTTCTTGAAGATGCAGATTAAAGAAGCAGGAATCGGGACGTTCAGAGACGTGGCCACAGTCTCTCAGACGGCCACTGTGTACGACgctctgtctgtgtttgtggaGCGACGCGTGTCTGCTCTGCCTGTGGTGGATGATGATGGTAAGGTGGTCGCCCTGTATTCCAGATTTGATGTGATcAATCTTGCGGCCCAGAAGACCTATAATAACCTGAGCATGAGCATGCAGGAGGCGGTGCGCAGGAGACGCTGCTATGTGGAAGGAGTCATTAAATGTTACCCTGACGAGACTTTAGAGACTGTTATTGACAGAATAGTCAAGGCAGAGgtccATAGGCTGGTGCTTGTGGACAGAGAAGACGTGGTTCGGGGAATAATCTCTCTGTCAGACCTGCTGCAGGCCATAGTTTTATCCCCAGCAGGTATTGACGCTCTTTTTTCCTAA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-419 Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRKAG3 (protein kinase AMP-activated non-catalytic subunit gamma 3).

Ensembl:

ensembl_id ENSDART00000126468

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000128 lncRNA upstream 6232 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00003020 lncRNA upstream 373694 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA upstream 373694 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00003019 lncRNA upstream 444102 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003017 lncRNA upstream 859191 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00000137 lncRNA downstream 6769 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00003022 lncRNA downstream 196650 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA downstream 214982 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000148 lncRNA downstream 481805 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 575955 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000129 mRNA upstream 458 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000127 mRNA upstream 2969 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000125 mRNA upstream 14177 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000126 mRNA upstream 14177 6135188 ~ 6158609 (+) True XLOC_000066
TCONS_00000124 mRNA upstream 585211 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000136 mRNA downstream 6721 6189949 ~ 6210718 (+) False XLOC_000068
TCONS_00000138 mRNA downstream 23722 6206950 ~ 6210718 (+) True XLOC_000068
TCONS_00000139 mRNA downstream 42265 6225493 ~ 6240518 (+) False XLOC_000069
TCONS_00000140 mRNA downstream 42907 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000141 mRNA downstream 60678 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000123 other upstream 670702 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 685624 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 722342 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 754279 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 2412752 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000149 other downstream 604462 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 880609 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2970866 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2971765 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 3035420 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU1377 True 286 lncRNA 0.43 1 CI01000000 1755093 ~ 1755378 (-)
grasscarp (Ctenopharyngodon idella) CI01000299_03176677_03185710.mRNA True 1404 mRNA 0.45 11 CI01000299 3176677 ~ 3186067 (+)
eurasian perch (Perca fluviatilis) TU1377 True 1147 lncRNA 0.50 4 NC_053112.1 2994110 ~ 2995538 (-)
tiger barb (Puntius tetrazona) TU1377 False 1477 lncRNA 0.43 10 NC_056699.1 4938219 ~ 4944834 (+)
mexican tetra (Astyanax mexicanus) TU1377 True 234 lncRNA 0.50 1 NC_035897.1 3323628 ~ 3323861 (+)