RNA id: TU253607


Basic Information

Item Value
RNA id TU253607
length 220
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G223579
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1348122 ~ 1348341 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTGCTTTGCTAGTAACTATCATTGCTCGAAGTAGCAACCCCCGATCGGGAATTTTAGGGCAAAAGATTTACCACGCGGATTCGTTGACCAACAGAAAGCTGGTTGATTTGAAAGTGACTTATGTGTGCGCTGTGAACACACAATAGCGATTAAATTGTTTTAACAAAAGAGTAGTAGCCTAGTAAATGAATAATAATAGCCTATCGAATGAACAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253478 lncRNA upstream 11722 1335864 ~ 1336400 (+) True G223464
TU253423 lncRNA upstream 43057 1303648 ~ 1305065 (+) True G223414
TU253579 lncRNA upstream 69514 1278378 ~ 1278608 (+) True G223552
TU253578 lncRNA upstream 70131 1277734 ~ 1277991 (+) True G223551
TU253574 lncRNA upstream 75102 1272578 ~ 1273020 (+) True G223547
TU253458 lncRNA downstream 11752 1360093 ~ 1361800 (+) True G223444
TU253625 lncRNA downstream 147396 1495737 ~ 1495947 (+) True G223597
TU253630 lncRNA downstream 162570 1510911 ~ 1511141 (+) True G223602
TU253633 lncRNA downstream 180901 1529242 ~ 1529472 (+) True G223605
TU253649 lncRNA downstream 260797 1609138 ~ 1609416 (+) True G223616
CI01000052_01295531_01298937.mRNA mRNA upstream 48919 1294194 ~ 1299203 (+) True CI01000052_01295531_01298937
CI01000052_01143235_01145343.mRNA mRNA upstream 200972 1143156 ~ 1147150 (+) True CI01000052_01143235_01145343
CI01000052_01044855_01046432.mRNA mRNA upstream 301505 1044855 ~ 1046617 (+) True CI01000052_01044855_01046432
CI01000052_00906265_00916799.mRNA mRNA upstream 431309 904556 ~ 916813 (+) True CI01000052_00906265_00916799
CI01000052_00836931_00841228.mRNA mRNA upstream 506689 835368 ~ 841433 (+) True CI01000052_00836931_00841228
CI01000052_01368837_01373810.mRNA mRNA downstream 20496 1368837 ~ 1374198 (+) True CI01000052_01368837_01373810
CI01000052_01383491_01401660.mRNA mRNA downstream 33809 1382150 ~ 1402229 (+) True CI01000052_01383491_01401660
CI01000052_01405500_01408668.mRNA mRNA downstream 55473 1403814 ~ 1408862 (+) True CI01000052_01405500_01408668
CI01000052_01440901_01449517.mRNA mRNA downstream 92560 1440901 ~ 1450860 (+) True CI01000052_01440901_01449517
CI01000052_01468551_01480835.mRNA mRNA downstream 120210 1468551 ~ 1480982 (+) True CI01000052_01468551_01480835
TU253572 other upstream 77195 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 700985 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 750199 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2082795 3431136 ~ 3460136 (+) True G224953

Expression Profile